Corporate Banner
Satellite Banner
AgriGenomics
Scientific Community
 
Become a Member | Sign in
Home>Events>This Event
  Events - February 2014


Agricultural-Omics

17 Feb 2014 - 21 Feb 2014 - EMBL-EBI,Hinxton, Cambridge, UK



Bookmark and Share


Overview

This course will provide an overview of data resources, tools and analysis pipelines for 'omics datasets within the agricultural sciences. It will be delivered using a mixture of lectures, practical computer sessions and discussions based on agricultural case studies and public domain data. Additionally there will be opportunity to review the key opportunities and challenges within this field.

Audience

This course is aimed at researchers working within the agricultural sciences who have some previous experience of bioinformatics. Some of the tools to be introduced on the course will require the use of Unix commands and the R statistics package.  We strongly recommend that you familiarise yourself with these. Free tutorials are available from:

http://www.ee.surrey.ac.uk/Teaching/Unix/

http://www.r-tutor.com/r-introduction

Syllabus, Tools and Resources

During this course you will learn about…

  • Genomics : Velvet, Soap, BWA, SAMtools, BCFtools, VCFtools, Ensembl Genomes, PhyBase, PlantsDB, Plaza
  • Transcriptomics: Fastx, Allpaths-LG, Velvet, Bowtie, R, Bioconductor
  • Metagenomics: The Metagenomics Portal, RDP classifier, MEGAN, CARMA
  • Proteomics: PRIDE, OMSSA, PX submission tool
  • Metabolomics: MetaboLights

Learning Objectives

After this course you should be able to…

  • Discuss a variety of workflow approaches to omics technologies
  • Browse and access a range of agricultural omics data available in public repositories
  • Use tools to aid with the analysis of agricultural omics data
  • Appreciate some advantages and limitations of some omics methods and analyses
  • Assess the significance of specific analyses in the context of wider omics workflow


Further information
Scientific News
Tick Genome Reveals Secrets of a Successful Bloodsucker
NIH has announced that decipher the genome of the blacklegged tick which could lead to new tick control methods.
Custom Tuning Knobs to Turn Off Any Gene
Factory managers can improve productivity by telling workers to speed up, slow down or stop doing tangential tasks while assembling widgets. Unfortunately for synthetic biologists attempting to produce pharmaceuticals, microbes don’t respond to direction like human personnel.
Tick Genome Reveals Secrets of a Successful Bloodsucker
NIH-funded study could lead to new tick control methods.
New Method Promises to Speed Development of Food Crops
A new study addresses a central challenge of transgenic plant development: how to reliably evaluate whether genetic material has been successfully introduced.
Where Cancer Cells May Begin
Scientists use fruit fly genetics to understand how things could go wrong in cancer.
Key Enzyme in Pierce’s Disease Grapevine Damage Uncovered
UC Davis plant scientists have identified an enzyme that appears to play a key role in the insect-transmitted bacterial infection of grapevines with Pierce’s disease, which annually costs California’s grape and wine industries more than $100 million.
Bacteria Attack Lignin with Enzymatic Tag Team
Team from Rice, University of Wisconsin-Madison shows how nature handles lignin.
Milestone Resource in Wheat Research Now Available for Download
Leading on from The Genome Analysis Centre’s (TGAC) previous announcement of their new bread wheat genome assembly, the landmark resource is now publically available to download at the European Bioinformatics Institute’s (EMBL-EBI) Ensembl database for full analysis.
Nano-Reactor for the Production of Hydrogen Biofuel
Combining bacterial genes and virus shell creates a highly efficient, renewable material used in generating power from water.
Cleaning Wastewater with Pond Scum
A blob of algae scooped from a fountain on South Street almost two years ago, has seeded a crop of the green stuff that Drexel University researchers claim is more effective at treating wastewater than many of the processes employed in municipal facilities today.
Scroll Up
Scroll Down
Skyscraper Banner

Skyscraper Banner
Go to LabTube
Go to eposters
 
Access to the latest scientific news
Exclusive articles
Upload and share your posters on ePosters
Latest presentations and webinars
View a library of 1,800+ scientific and medical posters
2,900+ scientific and medical posters
A library of 2,500+ scientific videos on LabTube
4,200+ scientific videos
Close
Premium CrownJOIN TECHNOLOGY NETWORKS PREMIUM FOR FREE!