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Tuesday, May 22, 2012
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Processing and Managing Analytical Data to Extract Data to Extract and Share Knowledge – How Far We’ve Come and Why It’s So Hard?
Michael Boruta and Sanjivanjit K. Bhal, Advanced Chemistry Development, Inc.

This paper discusses the ACD/Spectrus Processor, the new all-in-one analytical data processing and chemical characterization software.

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Validation of an Automated Cell-Based Bioluminescent TNFa Blocker Bioassay
Brad Larson, Tracy Worzella, Rich Moravec, Neal Cosby, Frank Fan, Teresa Surowy and Peter Banks

TNFa blocker biopharmaceuticals represent an important and successful class of protein drugs used in the treatment of several autoimmune diseases. Bioassays are indispensible tools in biopharmaceutical drug development and commercialization that are used to quantify biological activity and stability of drugs or drug candidates. The automation of these assays can serve to create an accurate, robust process which can allow the researcher to perform other more important functions.

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SpectraMax® Microplate Readers: A complete solution for Transcreener® assays
Cathleen Salono, Caroline Cardonnel, Kasia Proctor and Cathy Olsen

Transcreener® ADP2 Assays are homogenous assays with fluorescent readouts that enable the detection and screening of established drug targets including protein and lipid kinases, as well as emerging targets such as carbohydrate kinases, triphosphatases, heat shock proteins and other ATPases.

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Ensuring the Quality of Registered Compounds in a Drug Discovery Environment – A Multidisciplinary Approach
Ryan Sasaki and Tara Sinclair

Lexicon Pharmaceuticals have demonstrated that a practical automated verification system using HPLC, LC/MS, and 1D and 2D NMR can be implemented in an industrial/pharmaceutical environment. This system has proven to be robust, and provides added value to compound collection integrity and quality.

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A Self-Monitoring Quality Management System Incorporating Spectral and Chromatographic Data
David Snyderman, Colin Read and Tara Sinclair

LIMS are useful in managing certain types of data for quality management and sample tracking. However, these systems are generally limited in the types of information they can process and store. A unique automated quality management system has been developed and implemented at a fragrance manufacturer to evaluate chromatographic and spectral data of samples during quality testing.

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Characterizing a Nasal Spray Formulation from Droplet to API Particle size
D Huck, P Kippax, A Virden and Carl Levoguer

Interaction of a nasal spray product with the patients’ body depends on key variables such as the particle size of the delivered droplets and the suspended active pharmaceutical ingredient (API). The particle size of the drug can be an important parameter for the rate of dissolution and availability to sites of action within the nose.

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Trace Analysis of Isothiazolinones in Water Samples by Large-Volume Direct Injection Liquid Chromatography Tandem Mass Spectrometry
P. Speksnijder, J. van Ravestijn, and P. de Voogt

Isothiazolinones are used as preservatives, biocides and desinfectants in variety of industrial and domestic applications. The purpose of this study was to develop and optimize an LC–MS/MS method that would enable the determination without any derivatization or preconcentration step of isothiazolinones used in membrane technology for water purification and in household products, at levels relevant for the water cycle.

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An improved data processing pipe-line for comprehensive H-NMR and X/MS -omics data
R. J. O. Torgrip, K. M. Åberg, E. Alm

In the post acqusition analysis of comprehensive -omics data the pre-processing pipe-line is crucial to extract the maximum possible amount of information from the data. Here we show a processing pipe-line for (1D)H-NMR and (2D)X/MS data comprising; feature detection, inter-sample feature alignment and internal-standard free normalization that outperforms today’s state-of-the-art processing schemes.

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Alignment of 1H-NMR data using a Generalized Fuzzy Hough Transform
Erik Alm, Leonard Csenki, Ralf J.O. Torgrip, K. Magnus Åberg, Lars I. Nord, Ina Schuppe-Koistinen and Johan Lindberg

In metabolic profiling, multivariate data analysis techniques are used to interpret 1D 1H–NMR data. Multivariate data analysis techniques require that peaks are located in the same variables in every spectrum – this requirement is not met in native NMR spectra. Current state-of-the-art alignment algorithms are unable to align peaks when the spatial order of the peaks changes. We present the Fuzzy Generalized Hough Transform alignment which solves the alignment problem.

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1H NMR for the Accurate Quantification of Analytical Reference Standards
Jan Schripsema, Denise Dagnino and Peter Verhaert

NMR can be used for the quantification of minute quantities of standard compounds. The high specificity of NMR signals permits absolute quantifications independent of the presence of impurities. The feasibility and limits of NMR application are demonstrated through the analysis of algal toxins and polar substances in butter.

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Showing Results 1 - 10 of 11
Scientific News
Purdue University Researchers Use Nanoscale IR Spectroscopy via AFM-IR
Use of Anasys Instruments' nanoIR™ system to provide key insights into drug-polymer blends.
1H NMR Metabolomics Analysis of Glioblastoma Subtypes
In this study, researchers from the National Research Council, Canada investigate the correlation between the metabolomics and gene expression characteristics of glioblastoma multiformes.
Faster Way to Probe Proteins
Infrared spectroscopy allows scientists to analyze protein structure on an ultrafast timescale.
Resolving Nitrogen-15 and Proton Chemical Shifts for the Mobile Segments of Elastin with Two-Dimensional NMR Spectroscopy
In this study, one- and two-dimensional NMR experiments are applied to uniformly- 15N-enriched synthetic elastin, a recombinant human tropoelastin that has been crosslinked to form an elastic hydrogel.
Probing the Behaviors of Gold Nanorods in Metastatic Breast Cancer Cells Based on UV-vis-NIR Absorption Spectroscopy
Spectroscopic analysis monitors the behaviors of AuNRs in living cells and may be helpful in choosing the optimum laser stimulation wavelength for anti-tumor thermotherapy.
Exploring the Body Using Light
Exploring the advantages of near infrared or NIR spectroscopy in diagnostics.
Raman Spectroscopy and CARS Microscopy of Stem Cells and Their Derivatives
Researchers from the University of Edinburgh have utilised Raman spectroscopy as a technique for the non-destructive characterisation of stem cells.
Esophageal Cancer Metabolite Biomarkers Detected by LC-MS and NMR Methods
Metabolic profiles derived from the combination of LC-MS and NMR methods were shown to readily distinguish EAC patients and potentially promise important routes to understanding the carcinogenesis and detecting the cancer.
Protein Dynamics at Eph Receptor-Ligand Interfaces as Revealed by Crystallography, NMR and MD Simulations
The research highlights the key role of protein dynamics in Eph-ephrin signalling, demonstrating how this would benefit future design of agonists/antagonists targeting Eph receptors.
Synthesis, Characterization and Biological Activity Studies of 1,3,4-Oxadiazole Analogs
Some of the compounds prepared were shown to possess remarkable antibacterial, antifungal and anti-inflammatory activities.
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