Corporate Banner
Satellite Banner
Technology
Networks
Scientific Communities
 
Become a Member | Sign in
Home>Resources>White Papers>This White Paper
  White Papers
Scientific News
The Changing Tides of the In Vitro Diagnostics Market
With the increasing focus in personalized medicine, diagnostics plays a crucial role in patient monitoring.
LaVision BioTec Reports on the Neuro Research on the Human Brain After Trauma
Company reports on the work of Dr Ali Ertürk from the Institute for Stroke and Dementia Research at LMU Munich.
NIH Study Shows No Benefit of Omega-3 Supplements for Cognitive Decline
Research was published in the Journal of the American Medical Association.
Less May Be More in Slowing Cholera Epidemics
Mathematical model shows more cases may be prevented and more lives saved when using one dose of cholera vaccine instead of recommended two doses.
Investigating the Vape
Expert independent review concludes that e-cigarettes have potential to help smokers quit.
NIH Launches Human RSV Study
Study aims to understand infection in healthy adults to aid development of RSV medicines, vaccines.
Researchers Discover Synthesis of a New Nanomaterial
Interdisciplinary team creates biocomposite for first time using physiological conditions.
Poor Survival Rates in Leukemia Linked to Persistent Genetic Mutations
For patients with an often-deadly form of leukemia, new research suggests that lingering cancer-related mutations – detected after initial treatment with chemotherapy – are associated with an increased risk of relapse and poor survival.
Flu Remedies Help Combat E. coli Bacteria
Physiologists from the University of Zurich have now discovered why the intestinal bacterium Escherichia coli (E. coli) multiplies heavily and has an inflammatory effect.
Marijuana Genome Unraveled
A study by Canadian researchers is providing a clearer picture of the evolutionary history and genetic organization of cannabis, a step that could have agricultural, medical and legal implications for this valuable crop.
Scroll Up
Scroll Down

OmicSoft Aligner
Bookmark and Share


OmicSoft Corporation

Whitepaper discussing the technique of aligning next generation sequencing (HTS) data.

OSA is Omicsoft's read aligner designed for high performance alignment of short or long reads to reference libraries (genomes or transcriptomes).

 Key features of OSA:
1. High performance for both single end alignment and paired end alignment. Works on reads with 17-65536 nucleotides.
2. For Illumina reads (17nt or longer), allow any number of mismatches and a single indel in the reads. Can identify and report all available alignments in the genome with specified mismatches/indel.
3. For long reads (e.g. 454 reads or PacificBio reads), allow any number of mismatches and indels in the reads. Use banded Smith-Waterman to find the optimal alignment.
4. Directly align RNA-Seq reads to genome by considering both known and novel exon junctions
5. Directly align fusion reads: reads spliced by two different genes or genomic regions
6. Automatic quality based trimming
7. Automatic adapter trimming
8. Support all common input formats (.fasta; .fastq; .qseq; .sff); directly support .gzip files allowing savings in file space
9. Support multiple threads

Further Information


Skyscraper Banner

Skyscraper Banner
Go to LabTube
Go to eposters
 
Access to the latest scientific news
Exclusive articles
Upload and share your posters on ePosters
Latest presentations and webinars
View a library of 1,800+ scientific and medical posters
2,500+ scientific and medical posters
A library of 2,500+ scientific videos on LabTube
3,700+ scientific videos
Close
Premium CrownJOIN TECHNOLOGY NETWORKS PREMIUM FREE!