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Embryos Can Eliminate Bacteria Before Forming Their Immune System

A small cell with a textured surface.
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Research led by scientists from the Institute of Molecular Biology of Barcelona (IBMB) of the CSIC and the Bellvitge Biomedical Research Institute (IDIBELL) has managed to film how a few days-old embryos defend themselves from a potential infection by bacteria. The work is published this week in the journal Cell Host and Microbe.


Besides the CSIC and the IDIBELL, the research has involved scientists from CRG Barcelona, Pompeu Fabra University (UPF), the Institute for Bioengineering of Catalonia (IBEC), the University of Barcelona (UB), the Hospital Universitario Dexeus and ICREA.


Specifically, they have been able to see how zebrafish embryos use cells present on their surface, known as epithelial cells, to ingest and destroy bacteria through a process called phagocytosis, similar to that carried out by white blood cells. Crucially, scientists could observe that this ability to eliminate bacteria is also present in human embryos.


Using state-of-the-art microscopy techniques, the research shows how cells capture Escherichia coli and Staphylococcus aureus bacteria through small protrusions of their membrane, in which the protein Actin is involved.  "Our research shows that, at the beginning of development – before implantation in the uterus and before the formation of organs – embryos already have a defence system that allows them to eliminate bacterial infections," says Esteban Hoijman, researcher at IBMB-CSIC and IDIBELL, leader of the research. The first author of the work is Joan Roncero-Carol, predoctoral researcher at the Embryonic Cell Bioimaging Laboratory  of the CSIC-IDIBELL.

The research describes a mechanism of phagocytosis similar to that used by white blood cells, and reveals that this mechanism is also present in human embryos

This process, scientist explain, works as a phagocytosis mechanism, activates immunity genes in these cells, effectively eliminates bacteria and contributes to the correct embryonic development in case of infection.


"This system could represent the origin of immunity. The study reveals the first interaction between the newly forming organism and its biological microenvironment," adds Hoijman, who heads the Embryonic Cell Bioimaging laboratory (www.embryobioimaging.com).

Preventing malformations and improving reproductive therapies

At the beginning of development, embryos are exposed to multiple changes in their environment which can pose a threat, since embryos have not yet developed the immune system to protect them.


In the uterus, infections have a high incidence and are associated with infertility. However, it has remained a mystery until now how an embryo reacts when it encounters a bacterium. This work reveals that immune capacities of an embryo begin long before the existence of white blood cells, and "could help us, in the future, to improve fertility, prevent embryonic malformations and develop new reproductive therapies," explains Esteban Hoijman.


In this sense, the finding also highlights the important need to know in more detail the population of bacteria that can colonize the uterus, differentiating the invaders (and possible pathogens) from potential resident bacteria that could have beneficial effects on reproductive physiology.


Reference: Roncero-Carol J, Olaizola-Muñoa J, Arán B, et al. Epithelial cells provide immunocompetence to the early embryo for bacterial clearance. Cell Host & Microbe. 2025. doi: 10.1016/j.chom.2025.05.025


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