3D Structure of a Key Protein for Genome Editing Revealed
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Gene editing is one of the latest breakthroughs in biology. The widely known CRISPR-Cas gene editing system provided prokaryotes (organisms that lack cell nuclei) an immunity against foreign DNA. Since the discovery of the CRISPR gene editing technology, scientists are revealing the evolution of the CRISPR-Cas proteins from their precursors. That knowledge will help them develop other small and new genome editing tools for gene therapy. At the University of Tokyo, Prof. Osamu Nureki’s group works on identifying the structure and function of the proteins involved in genome editing. In a recent study by the team, they discovered the 3D structure of a protein called TnpB, a probable precursor to the CRISPR-Cas12 enzyme. Their findings appeared in the journal Nature.
Previous research suggests that the TnpB protein may work like a pair of molecular scissors, cutting DNA with the help of a special non-coding RNA called ωRNA. But exactly how the RNA-guided DNA cleavage works and its evolutionary relationship with Cas12 enzymes was unknown, which prompted Nureki lab’s investigation. Their first and most crucial step toward understanding that was to reveal the protein structure.
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“Our findings provide mechanistic insights into the TnpB function and advance our understanding of the evolution from TnpB proteins to CRISPR-Cas12 effectors,” says Ryoya Nakagawa, a graduate student and one of the first authors of the research paper. In the future, he added, “We will explore the potential applications of TnpB-based gene editing techniques.”
Reference: Nakagawa R, Hirano H, Omura SN, et al. Cryo-EM structure of the transposon-associated TnpB enzyme. Nature. 2023. doi: 10.1038/s41586-023-05933-9
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