Reliable Automation of High-Throughput PCR / Sequencing Plate Production
News Nov 28, 2006
A compact, high throughput automation system from Velocity11(http://www.velocity11.com) has enabled the Hubrecht Laboratory (Utrecht, The Netherlands) (http://www.niob.knaw.nl/) to routinely and error-free grid out genomic template DNA from 96-well deep well blocks into hundreds of 384-well PCR plates, setting up PCR and sequencing reactions.
Driven by a growing need for throughput for mutation discovery because screening intensities were increasing as the zebrafish knockout technology was offered as a service the Hubrecht Laboratory sought an automation solution that routinely and error-free would produce PCR / sequencing plates with minimal handling effort.
As a supplier of automation technology solutions for life science laboratories, Velocity11 was familiar with many of the challenges of the Hubrecht Laboratory application.
The Velocity11 VPrep / BenchCel/ PlateLoc automation system was selected because of its flexible interchange between 96 and 384-channel operation, ease of programming, speed of processing and the easy integration of all the required items.
Running error-free 24/7 the VPrep / BenchCel/ PlateLoc automation system has enabled the Hubrecht Laboratory to increase throughput to 200 x 384-well plates per day (c. 75,000 reactions).
Velocity11 claims that the BenchCel™ is a robust benchtop microplate handling system that delivers the speed and precision of much larger and more expensive automation platforms.
This system features a high-speed plate shuttle that accesses the integrated microplate stacks and two peripheral instruments.
Powered by the VWorks™ automation control software, and an integrated labware database the BenchCel platform can integrate with a wide range of peripheral instruments, including all major Velocity11 products as well as various third party devices.
The VPrep includes a choice of interchangeable heads for 8-, 16-, 96- and 384-channels.
Eight pneumatic sliding shelves are arranged on either side of the pipetting head permitting access to the plates, while conserving deck space. Its head is fitted with a 2 axis positioning stage that accesses all quadrants of 96, 384, and 1536 well microplates.
Integrated with a BenchCel automated microplate handling system, it will reduce cycle time for even demanding pipetting protocols.
The Velocity11 PlateLoc is a thermal plate sealer characterized by its speed, small footprint, ease of use, and dependability.
Designed to be versatile, the PlateLoc accommodates deep well, assay, PCR, DNA sequencing and compound storage plates.
It forms a consistent seal around each individual plate well, creating a seal of very high integrity.
Looking to the future the Hubrecht Laboratory are investigating how the VPrep / BenchCel/ PlateLoc automation system can help them run large sets of PCR's to systematically amplify the open reading frames of large sets of genes from model organisms or patient material.
These will serve as the input for emergent massively parallel sequencing technology.
There are hundreds of thousands of structural variants (SVs) in the human genome that are hard to identify than single nucleotide variants. Researchers have used a full suite of genomic technologies to analyze the number of SVs in three individuals, and the results present as the most comprehensive catalog of SVS to date.READ MORE