The Scientific Observer Issue 37
Magazine
Published: August 30, 2024
Credit: Technology Networks
In issue 37 of The Scientific Observer, we’re diving into the latest research into immunity and infectious diseases.
Our feature article explores the process of immune system aging, asking whether there is anything we can do to slow the aging clock and boost immune function.
We also explore new long COVID research and highlight the latest progress in the fight against HIV – and so much more.
This issue also features:
- How To Navigate the Transition From PhD to Postdoc
- “This Podcast Will Kill You” Hosts Talk Successful Science Communication, Overcoming Failure and Quarantinis
- Epstein-Barr Virus, Multiple Sclerosis and Cancer: Looking Back at 60 Years of Research
How To Navigate the Transition
From PhD to Postdoc
Unveiling the Progress and
Challenges in the Fight
Against HIV
ISSUE 37, AUGUST 2024
2
CONTENT
FROM THE NEWSROOM 04
ARTICLE
“This Podcast Will Kill You”
Hosts Talk Successful Science
Communication, Overcoming
Failure and Quarantinis 06
Molly Coddington
ARTICLE
How To Navigate the Transition
From PhD to Postdoc 12
Andy Stapleton, PhD
RESEARCH SPOTLIGHT
Using Wearable Technology To
Predict Cognitive Function in
Patients With MCI 14
Suhanee Mitragotri
ARTICLE
Epstein-Barr Virus, Multiple
Sclerosis and Cancer: Looking
Back at 60 Years of Research 17
Blake Forman
FEATURED ARTICLE
Can We Prevent Immune
System Aging? 20
Kate Harrison, PhD
ARTICLE
Chasing Dreams, Overcoming
Obstacles and Making a
Difference in the World of
Medicine and Science 24
Karen Steward, PhD
ARTICLE
Unveiling the Progress
and Challenges in the Fight
Against HIV 27
Kate Robinson
ARTICLE
How Long COVID Research
Could Change the Way We Think
About Blood Microclots 31
Leo Bear-McGuinness
ARTICLE
Scientific Publishing Coalition
Sees Purpose Lead the Way 35
Karen Steward, PhD
MEET THE INTERVIEWEES 37
14 27
20
FEATURE
Can We Prevent
Immune System
Aging?
Kate Harrison, PhD
AnnaMaria Vasco, iStock
Dear readers,
Welcome, to issue 37 of The Scientific Observer.
In this issue, we bring together a diverse array of articles
and interviews that highlight groundbreaking research
in infection and immunity, kicking off with an exclusive
interview with the hosts of “This Podcast Will Kill You”,
Drs. Erin Welsh and Erin Allmann Updyke. The dynamic
science comms duo shared a longing to talk about epidemics and bizarre medical mysteries in a way that was
fun, relatable and helpful for everyone, regardless of
their background. Speaking to Technology Networks, they
discuss how their podcast was born and why infectious
disease research is so fascinating.
At the heart of this issue is our feature article, which sees
Dr. Kate Harrison confront the topic of aging research
from a unique angle – the immune system. As we age, so
does our immune system. It remodels and, as a result, its
ability to mount a robust immune response is hindered.
Harrison explores how this process happens, how it
can increase our disease susceptibility and interviews
renowned experts to learn whether we can stop it.
Also in issue 37, we spotlight innovative research, such as
using wearable technology to predict cognitive function in
patients with mild cognitive impairment, and take a retrospective look at 60 years of research on the Epstein-Barr
virus, its connection to multiple sclerosis and cancer.
Kate Robinson examines the ongoing battle against HIV,
shedding light on progress and the challenges that remain,
while Drs. Karen Steward and Andy Stapleton address
wider issues in scientific research, such as scientific
publishing coalitions and how to thrive in your transition
from PhD to Post-Doc.
We hope you enjoy this issue and, as always, thank you
for reading.
The Technology Networks Editorial Team
3
Kate Harrison, PhD
Kate is a Senior Science Writer
at Technology Networks.
Kate Robinson
Kate is a Science Editor for
Technology Networks.
EDITORS’ NOTE
CONTRIBUTORS
Blake Forman
Blake is a Senior Science Writer for
Technology Networks.
Andrew (Andy) Stapleton, PhD
Andy Stapleton is an educator,
entrepreneur and research chemist.
Karen Steward, PhD
Karen is a Senior Scientific Specialist
for Technology Networks.
Leo Bear-McGuiness
Leo is a Science Writer for
Technology Networks.
Molly Coddington
Molly is a Senior Writer and
Newsroom Team Lead for
Technology Networks.
Suhanee Mitragotri
Suhanee is an undergraduate student
at Harvard University and a freelance
science writer.
4
iStock, Meixiang Wang/ NC State University
Want to learn more?
Check out theTechnology Networks newsroom.
Older individuals who self-reported using psychedelics had
fewer depressive symptoms and higher cognitive performance.
Older Psychedelic Users Report
Fewer Depressive Symptoms
MOLLY CODDINGTON
The drug donanemab (also known as Kisunla™) has been
approved by the US Food and Drug Administration (FDA) for
the treatment of adults with early symptomatic Alzheimer’s
disease (AD). This marks the second anti-amyloid antibody
given full FDA approval to slow the progression of the disease.
New Alzheimer’s Drug Donanemab
Approved by FDA
SARAH WHELAN
Researchers have developed a new class of materials that
perfectly blend the hardness of glass with the stretchiness of
gels. These “glassy gels” could have future applications in 3D
printing, batteries and soft robotics, according to the creators
of the new polymer class.
Researchers Create “Glassy Gels”,
A New Class of Materials
ALEXANDER BEADLE
4 FROM THE NEWSROOM
From the Newsroom
5
iStock, Mosconi Lab
From the Newsroom
5 FROM THE NEWSROOM
Want to learn more?
Check out theTechnology Networks newsroom.
Reducing intake of processed meat products like bacon,
salami and corned beef by a third could prevent more than
350,000 cases of diabetes in the US over 10 years, according to
researchers from the University of Edinburgh.
To Prevent Diabetes and
Colorectal Cancer, Americans
Could Cut Down on Processed
Meat, Say Researchers
LEO BEAR-MCGUINNESS
Nightmares and hallucinations could be early warning signs
of autoimmune diseases. Many of these neuropsychiatric
symptoms haven’t been explored before and the researchers
argue that there needs to be greater recognition that mental
health symptoms can act as early warning signs of autoimmune disease.
Nightmares and Hallucinations
Could Be an Early Sign of
Autoimmune Disease
BLAKE FORMAN
Menopause is associated with neuropsychiatric symptoms
such as brain fog and depression. 17β-estradiol (E2) is the most
biologically active form of estrogen and previous research has
highlighted its role in various neurological and cognitive
functions.
In Vivo Imaging Reveals Increased
Estrogen Receptors in the PostMenopausal Brain
RHIANNA-LILY SMITH
6
Dr. Erin Welsh and Dr. Erin
Allmann Updyke describe
themselves as a “one-two
punch of infectious disease
knowledge”. The sci-com world’s
iconic duo formed a friendship
during their PhDs at the University
of Illinois at Urbana-Champaign,
where Welsh studied disease ecology
and Allmann Updyke studied disease
epidemiology.
It’s no secret that discussions of
science – be it through journals,
conferences or lab meetings – can be
somewhat intense, often loaded with
complexity and jargon. The Erins
shared a longing to talk about epidemics and bizarre medical mysteries
in a way that was fun, relatable and
helpful for everyone, regardless of
their background.
While exchanging podcast recommendations with one another, they
stumbled upon the idea of launching
their own and, before long, “This
Podcast Will Kill You” (TPWKY)
was born. Since 2017, the Erins have
taken listeners on a weekly deep dive
into a disease, exploring its biology,
history, epidemiology and how it has
affected the world.
The podcast’s archive features episodes on some of the world’s weirdest
and (not so) wonderful pathogens, as
well as disorders such as endometriosis and Parkinson’s. Each episode
kicks off with a firsthand account of
someone impacted by a disease, em-
“This Podcast Will Kill You”
Hosts Talk Successful Science
Communication, Overcoming
Failure and Quarantinis
MOLLY CODDINGTON
Grant Czadzeck, Erin Welsh and Erin Allmann Updyke
DR. ERIN WELSH AND DR. ERIN ALLMANN UPDYKE.
7
phasizing the human element of the
science that is discussed afterward.
Instead of lecturing their audience,
the Erins approach each podcast
episode as an opportunity to teach
and learn from one another. This
refreshing approach to science
communication has resonated with
listeners both within and outside of
the scientific community; at the time
of writing, 147 episodes are available
and boast rave reviews. TPWKY has
also been recognized through Webby
Award nominations in the Science
and Education Podcasts category.
In this interview, they reflect on
their journey so far, sharing how they
built TPWKY and offering advice
for budding sci-commers. They also
explain the origin of the famous
“quarantini”.
Molly Coddington (MC): What
interested you so much about
infectious disease research, and
why did you choose to pursue a
career in this field?
Erin Welsh (EW): It was a roundabout journey for me that always had
a destination, but I didn’t know what I
wanted to research along the way. I
started my undergraduate studies in
nursing where I took a microbiology
class and thought, “Hey, I really want
to be in this class”. I didn’t want to
sleep through my alarm; I wanted to
get up, hop on my bike and get there
for the 8am start. This was a little
unusual for me.
I changed my major to biology and
joined a research lab studying the
plague bacterium Yersinia pestis,
which was very cool. That’s where
a taste for the historical analysis of
epidemics started to emerge. When I
joined the lab, the first thing I did was
head to the library and find a book all
about the Black Death – I wanted to
know everything about it. From then
on, this would become my “fun time”
exploration of disease.
My academic work was focused on
the bacteria themselves, and I found
myself thinking that this was such a
small view of what I was interested
in within infectious diseases. I decided to pursue a master’s degree in
epidemiology and, when I was getting
ready to finish that degree, one of
my committee members asked what
my next step was. I said that I would
probably do a PhD in epidemiology
when he suggested I consider ecology. A large part of my thesis had explored environmental influences on
parasites, but it never occurred to me
that this was something I could study.
Erin Allmann Updyke (EAU):
Similar to Erin, I had never intended
to work within disease. I was studying marine biology and then took an
ecological parasitology class, and
that’s what shifted my mindset to
one of “Okay, so these parasites are
my people”. I needed to know more
about them.
I went on to do a master's degree
in public health and thought that I
wanted to be involved in outbreak investigation work. I completed my PhD
in entomology and that’s where I met
Erin – we were in the same laboratory.
It’s interesting to look back over how
this journey has progressed, because
so much of the work that we do now
is focused on trying to break things
down in a way that anyone, regardless
of their background, can understand
and appreciate. They can appreciate
not only how fascinating these diseases are, but how big of an impact
they have on society and our planet.
Throughout my education, so much
of the work that I enjoyed doing was
of a similar theme, such as informal
education work in undergrad studies.
It feels as though everything has
come together.
MC: You describe feeling “disenchanted with the insular world
of academia”. Can you talk
about how this manifested for
you? Was there a specific moment or event that led to the
creation of TPWKY?
EAU: We both finished our PhDs in
2018, and so in the summer of 2017
we were attending a lot of different
conferences. Conferences can be
incredible – you learn so much from
the fascinating research that is being
presented and you get to connect with
lots of different people. But as the
end of our PhDs were approaching,
we found ourselves asking “When
is this going to go beyond just these
four walls?”, or however many walls
the conference hall had!
We had both gotten really interested
in public health because of the impact
that diseases and disease ecology
have on such a large scale. I wanted
to be able to reach people that might
never be at one of these conferences,
but still wanted to know about
this research.
Me and Erin were being antisocial at
a barbecue towards the end of summer – a normal habit for us – when we
started discussing the podcasts that
we both listened to. We had this eureka moment where we knew we needed
to start a podcast about disease, because nothing like that existed and it
could be a cool thing. That was really
the moment when TPWKY was born.
EW: We had also become tired of the
impersonal language so often used
when discussing science. We wanted
it to be fun and engaging and exciting.
We had missed talking about research
topics such as the origin story of the
Despite the
challenges that
can accompany a
career in science
communication,
the Erins have
persisted in
building a platform
that educates and
inspires people all
across the world.
8
Exactly Right
nickname “clap” for gonorrhea, or the
fact that rabbits can have growths
caused by the Shope papilloma
virus, which may have inspired the
mythical Jackalope creature. These
fun tidbits are so interesting, and you
aren’t always able to explore as much
as you’d like when you’re deep into
PhD studies.
We loved talking about science and
wanted to have a fun, relaxed outlet
for doing so. I don’t think we realized
that so many other people would feel
the same way. TPWKY has been one
of the greatest joys from that respect.
MC: Please can you describe everything that our readers need
to know about the podcast – including the “quarantinis”?
EW: TPWKY is the science podcast
that explores the biology, history and
current status of various diseases and
other medical topics. But of course,
there's a lot more to it than just that!
At the beginning of each episode,
we include a firsthand account,
often from someone who has direct
experience with the disease. We have
done this from the very beginning in
order to humanize the topic that we’re
talking about, and as a way to complement learning about the biology of
the disease.
Take the plague for instance. When
you learn about plague in a classroom
setting, you’re probably learning
about whether it’s a gramme positive
or negative bacteria, what it looks like
on a stain, what its symptoms are or
how long the incubation period is, etc.
This is the nitty gritty of science. But
if you learn about it from a historical
perspective, you also get to explore
the impact it had on the economic
structure of major parts of Europe
or learn how it shifted the primary
language to English after the decline
of French and Latin. You might learn
about the invention of quarantine.
When we started the podcast, we
wanted to be able to look at a disease
from all different perspectives and
then relate it back to the human aspect
that this firsthand account provided.
Then there’s the “quarantini”. This
was just a way for us to have fun, and
for people to know that this is not a
serious podcast – or at least not all of
the time. We make a themed cocktail
for each episode of the podcast,
which now includes alcohol free
versions, the “placeboritas”. Over
time we’ve created cocktails such as
the “hair of the rabid dog”, “smallpox
on the rocks” and many others. Our
gonorrhea episode featured a cocktail called “burning love” – it’s really
delicious. We had both gotten really
interested in public health because of
the impact that diseases and disease
ecology have on such a large scale. I
wanted to be able to reach people that
might never be at one of these conferences, but still wanted to know about
this research.
MC: Sometimes the scientific environment can feel like an intimidating place. There can be a lot
of doubt – particularly in young
scientists – about whether they
belong there. You both make
science feel welcoming and a
place for everyone. Can you talk
about how do you do this?
EAU: It’s very intentional, and it’s
something that can be quite challenging to balance because we never want
to sugarcoat or present anything
that’s incorrect. We want to present
information in a way that is logical
and easy to follow.
This feels particularly important for
the historical aspect of the podcast,
at least for me. I was a “science kid” – I
knew nothing about history. Now, my
favorite part of the podcast is being
able to learn about something that I’m
really interested in, in a way that is
really interesting.
No matter what your background
– whether it’s science-heavy, history-heavy or neither – there’s still
something that you can get out of
the podcast.
MC: What is the most enjoyable
aspect of creating TPWKY?
EAU: I have two favorite parts. The
first is that I get to work with Erin. It’s
perhaps a cheesy answer but it’s true
– we started this process just being
best friends. I love being able to work
9
Abigail E. Penner
with her, to learn from her and the fact
that we have maintained our friendship throughout this whole process.
My second favorite part is that we
have reached people in a way that I
never thought would be possible. We
receive emails from listeners that have
gone back to school after listening to
the podcast or got their flu jab for the
first time. It’s incredible to have had
that impact on people’s lives.
EW: I think Erin hit the nail on the
head. I also love that this podcast
gives me the opportunity to learn
broadly across different fields rather
than just intensely in one. Being able
to follow a line of curiosity down a
rabbit hole and not being restricted
in terms of it being “relevant” to
your work.
MC: Have you experienced any
“failures” in your careers thus
far? If so, what did it teach you?
EW: After finishing my PhD, I went
on to do a postdoc in Finland, and I
left that postdoc early. I am no longer
involved in academia. I think that,
when you are trained in graduate
school, you are trained to be an academic – period. You are not trained
to work in any other industry unless
you seek that training elsewhere.
Leaving academia, even though I
knew without a doubt that I did not
want to be in that world, felt like a
failure. I had spent years of my life
doing something that was not what I
would end up doing.
Now, with distance and time, and
being able to do the thing that I truly
love and I am fulfilled by, the feeling
that this was a failure has started to
ease. It was my choice, and my reasons for doing so were valid. Often
it’s seen as a problem when someone
leaves academia, rather than the
conversation being centered around
academia itself. I think that this really
needs to get revisited.
EAU: I remember a lot of small failures throughout grad school; I could
never, ever keep a cell culture line
alive – I just wasn’t physically capable
of it! Pretty much all of the grants and
fellowships that I applied for, I never
got. I never published 98% of my PhD
thesis, and I still feel a little guilty
about that.
So, there's a lot of small failures, and
then there are bigger ones. I echo
what Erin has said. I am still in training right now, in the last year of my
residency. Even today, every single
person asks me: what are your plans
for the future? I still don't have an
answer for them. Besides that, I want
to do the podcast, but because it’s
not academia or it’s not straight medicine, I feel a sense of guilt in saying
that, which I think is just so unfair – I
know how hard we both work, and the
impact the podcast has had. But it’s a
nontraditional career path, and that
can sometimes come with stigma
attached to it.
Science is just failing over and over
and over again until you figure something out. Having the mindset of “it’s
okay to fail”, because that’s the only
way that we learn, is important. I have
failures, but I don’t have regrets.
MC: What advice would you offer others who would like to become science communicators?
EW: As I’ve had no formal training,
it's like hard to articulate, but I think
one of the most important aspects is
just trying out different things and
doing it, instead of seeking perfection
before you start. You have to feel
happy with what you’re sending out
to the world, but it doesn't have to
be perfect.
I think Erin and I both had the hardest
time working on the episodes that
we had the most knowledge about,
because when you're overexposed
to something you forget the building
blocks of knowledge that are required
to understand it. So, I think that it’s
important to practice science communication by talking with people
who are not scientists about it. Ask
I was always asked what I wanted to do
when I got older when I was a child, and
my answer was always to read books. I
literally get to do that now!
10
them to repeat back what you just
told them, to see if they’re able to
articulate it, to find out what they
struggled to interpret, etc. Now, with
distance and time, and being able to
do the thing that I truly love and I am
fulfilled by, the feeling that this was a
failure has started to ease. It was my
choice, and my reasons for doing so
were valid. Often it’s seen as a problem when someone leaves academia,
rather than the conversation being
centered around academia itself. I
think that this really needs to get
revisited.
EAU: I definitely echo Erin here – just
do it. When people train for a career
and then consider that it might not be
for them anymore, the hardest part is
always just taking that leap and actually doing the thing they want to try. It
can be really hard and scary because
you might fail.
My second piece of advice would be to
find something that you are actually
passionate about and have fun doing.
Work isn’t always fun – making our
podcast still requires a lot of work!
Don’t get me wrong, there are days
when we’re like “We don’t want to record this episode”. But, on the whole,
I think that what makes us effective
as science communicators is that we
want to be doing this. Interest and
passion go a really long way.
MC: What’s the greatest thing
about being women in science?
EW: Usually the question is “What
is the most challenging thing about
being a woman in science?”, so I had to
really think about this one. I asked my
group chat that is full of women that
went to the same school as me and
Erin. We all have different careers
now; some of us are in industry, some
of us are physicians and some of us
are science communicators.
They responded with answers such
as “getting to inspire the next generation of scientists”, or “being able
to pursue something that you never
thought you would do as a kid”. Then
somebody pointed out that we are all
in this group chat together, all women
scientists, all supporting each other
and understanding what we’re going
through. Even if we aren’t having the
same experience as each other, we can
still relate, empathize or sympathize.
That is really the best thing about
being part of this amazing community. The fact that I was able to ask
a group of women, who have all kept
in touch over the years, and getting
amazing answers; well, I think that’s
the best thing about being a woman
in science.
EAU: I feel exactly the same. When
Erin asked that question in our group
chat, I was like, this really is the best
part – the community that exists
around being women in science. I
think it's knowing that there is always
somebody that you can talk to, that's
going to have your back and that’s going to understand and support you. ⚫
thispodcastwillkillyou Instagram
11
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iStock
E
scaping the confines of a PhD
can be one of the most challenging and transformative
periods in an academic career.
Suddenly, you're a newly minted
Dr., and the world seems ripe with
opportunities. But is it as exhilarating
as it sounds? Reality often paints a
different picture.
In this article, we delve into the emotional and psychological evolution
from PhD to postdoc, exploring the
vital steps needed to rebuild your
identity beyond academia.
Whether you're grappling with the
shift to a structured workday or seeking strategies for long-term academic
success, you’ll find practical advice
and personal anecdotes to help you
thrive in your postdoc journey.
THE EMOTIONAL AND
PSYCHOLOGICAL
EVOLUTION
Make no mistake, one of the biggest
changes people face when transitioning from PhD to postdoc is how they
feel about themselves.
You are now a Dr.! Surely, it would
feel amazing…right? Well, no.
Post-PhD depression is a real and
common experience for many new
graduates.
Engaging in activities outside of academia allows you to rediscover and
develop personal interests that may
have been sidelined during the intense focus of your university years.
For instance, I immersed myself
in community-driven hobbies like
drumming in a Brazilian percussion
group which proved crucial in helping
me overcome post-PhD depression.
These activities not only provided a
much-needed break from academic
pressures, but also offered a sense of
belonging and joy that was so important in making my postdoc life better.
It's important for newly graduated
PhDs to recognize these emotions
as normal and seek support through
counseling, peer groups or mentors
who understand the unique challenges of this transition.
Many PhD students forget that their
identity extends beyond their research
project, and the project's completion
often leaves a cold void that can go
unrecognized for what it is – a form of
grief for the loss of your identity.
Rebuilding other facets of your identity
and nurturing your hobbies is a crucial
step to take after completing your PhD.
ADAPTING TO A NEW
RESEARCH ENVIRONMENT
As a postdoc, you’ll likely have new
project or admin management responsibilities that you didn’t have as a
PhD student.
This could include managing team members and ensuring project deliverables.
It might involve supervising junior
researchers, coordinating collaborative efforts and ensuring that project
milestones are met on time. Developing strong communication and organiHow To Navigate the Transition
From PhD to Postdoc
ANDY STAPLETON, PhD
13
zational skills is crucial for effectively
managing these responsibilities and
creating a productive research environment for yourself.
One effective solution to handle these
new challenges is to seek out training
and resources in project management
and leadership.
I enrolled in my university's mentoring
program and found it incredibly rewarding. I highly recommend seeking
out mentors to help you navigate this
transition. Often, younger academic
staff members can provide more relevant guidance and support than more
established academics.
Also, it can be tough adjusting to a
structured, job-like environment after
the haphazard timetables of a PhD
student. During a PhD, students often
have flexible schedules, allowing for
periods of intense work followed by
downtime. In contrast, I found that
all of my postdoc positions typically
required adherence to more regular
working hours and consistent productivity.
This shift can be challenging, but also
offers an opportunity to develop a
more balanced and sustainable work
routine. I was fortunate that the
research group I joined had a strong
industry influence, making it common
for people to work a standard nineto-five day.
However, I recognize this isn’t always
the case. Establishing a clear schedule
and setting boundaries between work
and personal time can significantly aid
in adapting to this new environment.
CAREER DEVELOPMENT AND
LONG-TERM PLANNING
If you want a career in academia, it is
important to see the postdoc years
as an opportunity to increase your
publication record. Don’t do what I
did, which was assume that this was
just the next step in the inevitable path
to an academic career – I didn’t push
enough for publications, and I paid the
price for it.
Building a strong publication record is
essential for securing future academic
positions and grants.
Postdocs should prioritize writing and
submitting papers, collaborating with
colleagues on publications, and taking
advantage of opportunities to present
their work at conferences. This proactive approach to publishing will enhance your academic profile and open
doors for future career opportunities.
Come up with a plan for transitioning
from being employed on someone
else’s grant to becoming an independent researcher – developing a clear
plan for transitioning to an independent research career is crucial for longterm success.
This includes identifying potential
funding sources, understanding the
application process, application
timelines and building a compelling
research proposal.
One thing you should be aiming for is
to build a network for collaborations
and future opportunities. Networking
is a vital component of academic
success, and postdocs should actively
seek out opportunities to collaborate
with researchers both within and
outside their institutions. Attending
conferences, participating in academic
societies and engaging with online research communities can help you build
a network of contacts who can provide
support, advice and collaboration
opportunities.
A strong professional network will
enhance your research, increase your
visibility in the academic community
and open doors for future career opportunities.
EMBRACING THE POSTDOC
JOURNEY
As you navigate this new territory,
it's essential to recognize the emotional and psychological shifts that
come with it.
Remember, feeling a sense of loss after
completing your PhD is normal, but it's
crucial to rebuild your identity by engaging in activities outside of academia
and seeking support from mentors
and peers.
The post-doc journey is about finding balance, honing your skills and
preparing for the next stage of your
academic career. By recognizing and
addressing the challenges, you can
turn this period into a rewarding and
enriching experience. ⚫
Many institutions offer workshops,
courses or seminars specifically designed
for early-career researchers.
iStock
Using Wearable
Technology To Predict
Cognitive Function in
Patients With MCI
Suhanee Mitragotri
RESEARCH SPOTLIGHT
Mild cognitive impairment (MCI), a decline in an individual’s cognitive
function that is greater than what would occur due to aging alone,
impacts over 15% of older adults worldwide. A multi-institutional
study, led by Dr. Yuri Rykov at Neuroglee Therapeutics and published
in BMC Medicine, demonstrates the potential of using wearable
technology to predict cognitive function in patients with MCI via
physiological markers.
iStock
14
Research
Spotlight
LACK OF MONITORING FOR
PATIENTS WITH MCI
MCI is characterized by frequent lapses
in thinking or memory during routine
activities, which can manifest as consistently forgetting important people or
events, struggling to maintain coherent
thoughts and misplacing items on a
regular basis. MCI often serves as a precursor for more severe conditions, such
as Alzheimer’s disease and dementia.
Traditional neuropsychologist tests for
patients with MCI only capture clinical
data during doctor visits, leaving gaps
in data when the patients are not at the
clinic. Wearable sensors, such as Fitbit,
are already capable of collecting information including blood volume pulse,
which can be used to calculate heart
rate and heart rate variability (HRV).
Previous research studies have shown
a correlation between HRV metrics and
cognitive function, specifically in executive function and episodic memory.
Dr. Rykov’s team built on this research
through this study in which they tested the ability of wearable sensors to
predict cognitive function as a method
to provide continuous monitoring of
patients with MCI.
USING WEARABLE
TECHNOLOGY TO PREDICT
COGNITIVE FUNCTION
The 10-week clinical trial was designed
for older adults, aged 50–70, including
30 individuals diagnosed with amnestic
MCI and 10 age-matched cognitively
normal individuals. During the trial,
participants underwent regular digitally
delivered multidomain therapeutic
intervention sessions. They were asked
to wear the Empatica E4 wrist-wearable device during these sessions, as
well as during sleep and other routine
activities. Cognitive performance was
measured at baseline at the start of the
trial and again at the end of the 10 weeks
using the neuropsychological battery
test (NTB), which includes assessments
of executive function, processing speed,
immediate memory, delayed memory
and global cognition. The device recorded physiological data, such as blood
volume pulse, electrodermal activity,
acceleration and skin temperature. They
utilized supervised machine learning
to train models predicting NTB scores
using digital physiological features and
demographics. Out of the 30 individuals diagnosed with amnestic MCI, 27
completed the trial, and 7 out of the 10
controls completed the trial, with missing data being attributed to improper
device usage or non-compliance.
The key findings from this study
were that:
• Digital physiological features
showed strong correlations with
processing speed, executive
function and global cognition
composite scores.
• Measures of HRV, particularly
cardiac sympathetic index (CSI)
and the high frequency HRV
(HRV-HF), correlated significantly with the cognitive composites.
• Predictive models that combined
digital physiological features and
demographics demonstrated the
greatest predictability for executive function scores.
THE POTENTIAL OF
WEARABLE TECHNOLOGY
FOR CONTINUOUS
COGNITIVE MONITORING
The research team found significant
correlations between tracked physiological markers and key cognitive
aspects such as processing speed, executive function and overall cognitive
performance. These components of
cognition are essential for everyday
cognitive tasks, underscoring the
potential of wearables for continuous
monitoring of cognitive function in
patients with MCI. HRV measures, in
particular, showed promise in predicting cognitive performance.
Continuous monitoring offers clinicians
a convenient way to gather patient
data outside of the clinic. This can be
especially advantageous after the implementation of a new treatment protocol
or during periods of significant deterioration in patient health because it can
fill in missing data gaps that would otherwise exist. If a patient were to come
into the clinic with severe deterioration
in cognitive function, physicians would
have the ability to track changes specifically by looking at data from wearable
sensors, which could help them point to
a particular time or date at which these
changes occurred.
Nevertheless, this study had limitations
that could have impacted the findings.
Firstly, the sample size is relatively
small, with no control group that did not
receive the intervention, and non-compliance led to the loss of potential data
that could have contributed to the
study. Specifically, only data from 17
individuals was viable to use after data
cleanup. Secondly, the study period was
relatively short, so long-term effects
may have been missed. Additionally,
given the setup of the study, factors
such as the amount of physical activity
or daily routine were not controlled for,
which could have impacted the results,
especially since many of the physiological markers, such as heart rate data, can
easily be influenced by external factors.
Furthermore, the study sample displayed a lack of ethnic variation, which
makes the results less generalizable to a
larger population.
DEVELOPING A MORE
CONTROLLED STUDY
Further research is needed to control
for more external factors and ensure
that these markers are reliable predictors of cognitive function. Moreover,
a controlled study would allow for
greater exploration of potential confounding variables, thereby enhancing
the validity and generalizability of the
findings. The authors acknowledge
that the achieved accuracy of the
predictive models is currently below
desirable levels, preventing the replacement of standardized cognitive
tests with wearable-based physiological measurements as they are. However, with further work, this approach
shows promise for improving care for
patients with MCI. ⚫
RESEARCH SPOTLIGHT 15
This online event is aimed at those working within academia and pharmaceutical drug development, who
want to hear from experts across their field. Focus will be given to the latest advances in small molecule
drug discovery and development, biopharma and biotechnology.
REGISTER NOW
Brought to you by the publication
September 18–19 2024
8AM PDT | 11AM EDT | 4PM GMT
SPEAKERS
Joseph Tucker, PhD
Enveric Biosciences Inc
Adityo Prakash
Verseon
Raviv Pryluk, PhD
PhaseV
Melanie Homberg, PhD
Lonza
Aurita Menezes, PhD
Lonza
Sharmeen Roy
DoseMe
Romina Durigon, PhD
Sphere Fluidics
Niven Narain, PhD
BPGbio
Jamie Spangler, PhD
John Hopkins University
Kevin Grady
Lonza
Steffen Grimm
Evotec
Annie Yim, PhD
Boehringer Ingelheim
Franziska Hausig-Punke, PhD
Analytik Jena
Jon Stokes, PhD
McMaster University
STANDARD SPONSORS
PLATINUM SPONSOR TECHNOLOGY SPOTLIGHT SPONSORS
Advances in Drug Discovery
& Development
ONLINE SYMPOSIUM
PANEL DISCUSSION
17
iStock
T
he Epstein-Barr virus (EBV)
was the first virus to be
discovered that could cause
human cancer. Since then,
the virus has been implicated in the
development of a range of different
cancers and, more recently, in the development of multiple sclerosis (MS).
Studying EBV over the past 60 years
has shed light on general aspects of
cancer pathogenesis, the immunology
of virus infections and different approaches to cancer immunotherapy.
Lawrence Young is an emeritus
professor of molecular oncology
and director of the Warwick Cancer
Research Centre at the University of
Warwick. Known for his work on the
role of virus infection in the development of cancer, his research has led to
several clinical trials including contributing to the ongoing development
of a therapeutic EBV vaccine for MS.
In an interview with Technology
Networks, Young discusses the historic discovery of EBV, the current
interest in EBV vaccines and his
thoughts on the future direction of
virology research.
Blake Forman (BF): For our readers, who may not be familiar
with the discovery of EBV, can
you elaborate on the historical
journey of EBV discovery and
how it was first linked to cancer?
Lawrence Young (LY): During
the 1950s, a young pathologist called
Anthony Epstein was investigating the
Rous sarcoma virus, a virus that was
known to cause cancer in chickens.
Epstein was interested in understanding if viruses could also play a role in
human cancer.
In 1961, Epstein attended a lecture by
Denis Burkitt, a surgeon working in Africa. Burkitt had discovered a lymphoma that appeared in the jaws of young
children. He mapped the appearance of
this lymphoma to areas where malaria
was common. This sparked interest
in Epstein who hypothesized that an
infectious agent may be the cause of
this lymphoma.
Following the lecture, Burkitt arranged
to send tumor samples from Africa to
London for Epstein to investigate further. After a few years of trying in vain
to find a virus in the samples, Epstein,
alongside a young researcher called
Epstein-Barr Virus, Multiple Sclerosis
and Cancer: Looking Back at 60
Years of Research
BLAKE FORMAN
60 YEARS ON FROM THE DISCOVERY OF THE EPSTEIN-BARR VIRUS, PROFESSOR LAWRENCE YOUNG DISCUSSES
CURRENT EFFORTS TO FIND A VACCINE.
18
Yvonne Barr, was eventually able to
grow free-floating cancer cells to study.
BF: Given the significant role of
viruses in cancer development,
why do you think public awareness about this link remains
limited?
LY: Cancer-causing viruses are responsible for approximately 30% of
cancer cases in low- and lower-middle–income countries and around
15% of cancers worldwide. Given the
amount of research in this area and
its applications in human health, it
is surprising there is not more public
awareness.
Studies into the role of viruses in
cancer have led to the development
of vaccines as with the human
papillomavirus. Similarly, a vaccine
against hepatitis B has been used to
help prevent the development of liver
cancer for quite some time. I think
the limited public awareness of the
role of viruses in cancer comes down
to a lack of publicity.
BF: Can you talk about the current interest in EBV vaccines;
what impact could these vaccines have on the management
of associated diseases such as
MS?
LY: The development of vaccines
against EBV has had a somewhat
checkered history. One of the problems is that more than 90% of adults
globally are infected with this virus.
Often, we contract the virus when we
are young and there are no symptoms.
Stopping the early transmission of
the virus is very difficult.
Individuals who contract EBV as
adults are much more likely to
develop glandular fever, otherwise
known as infectious mononucleosis.
There has been a lot of work over
the years to try and develop vaccines
that might prevent this disease. This
has been difficult to justify economically because of the relatively small
number of people who get glandular
fever. You would also ideally need to
vaccinate all individuals as babies,
probably at birth.
There is renewed interest in an EBV
vaccine off the back of studies identifying EBV as a driving force in the
origin and development of MS. We've
learned a lot more about the different
proteins that the virus produces to
get into different cell types. This has
made researchers more aware of the
fact that if we're going to have an
effective vaccine, we're going to have
to use a combination of different EBV
proteins as targets.
The revolution in our understanding
of vaccinology, particularly as it
relates to mRNA vaccines, means
that we can incorporate many more
elements of a virus into a vaccine.
Something that we know has been
very important during the COVID-19
pandemic.
Moderna is currently involved in early clinical trials looking at an mRNA
vaccine for preventing EBV infection.
There is hope that vaccines like this
could be used not only to prevent
EBV-associated diseases like MS but
also to treat people with these diseases including cancer.
BF: Are there any current hurdles
in the study of EBV?
LY: There is a current lack of funding
for fundamental research and there is
still a lot we need to learn about the
virology of EBV and similar viruses.
The focus is now on developing better approaches to treating EBV-associated malignancies. That shift is
understandable when resources are
limited, but one concern I have is that
we still need to fund basic virology.
Due to COVID-19 people are now
more aware that we must not be complacent about viruses. I would hope
that some of that would translate
into more funding for fundamental
research into virology.
BF: Are there any novel technologies or methodologies that you
think will help progress studies
further?
LY: It has been difficult to manipulate
the viral genome of EBV due to its
large size. We've now got much better
With the help of a colleague called Burt Achong,
and by studying Burkitt’s lymphoma cells with an
electron microscope, the researchers were able to
identify virus particles that looked like the shape of
a herpes virus in the growing cancer cells. In 1965
the scientific community confirmed that Epstein and
company had spotted a brand-new human virus, and
it was officially christened Epstein-Barr virus.
19
iStock
methodologies for studying genomes
of this size. This means that we can
now make recombinant forms of EBV
so that we can study the function of
individual virus genes in the context
of the whole virus.
Separating viral DNA from human
DNA to sequence it has also been
challenging but new technology is
now providing us with better ways of
doing this. EBV was first sequenced
in 1984, which was when I first started in the field. At that time, it was the
largest piece of DNA ever sequenced.
We now have access to better techniques that are helping us determine
whether there are different varieties
of EBV. We know there is some
variation (polymorphisms) in the
EBV genome. Studying this further
will help us understand if there is a
specific variant of EBV that might be
more associated with MS.
BF: How do you envision EBV research evolving in the next few
years?
LY: EBV research has led the way in
the development of early diagnostics
for cancer. Measuring EBV DNA in
the blood is a good indicator when
investigating if an individual might go
on to develop EBV-associated cancer.
Alternatively, when an individual has
EBV-associated cancer, measuring
EBV DNA levels in the blood can tell
you whether they're responding well
to therapy and if the cancer recurs.
More generally, studying tumor DNA
in the blood as a liquid biopsy for cancer is an exciting and expanding area
of research.
Understanding the virus at the epidemiological level is another continuing
avenue of investigation. Some of the
most common EBV-associated malignancies occur in specific parts of the
world. For example, EBV-associated
nasopharyngeal cancers are particularly common within the Chinese
population. Further research is still
needed to understand why this is. A
combination of the underlying genetics of the individual, environmental
factors and the genetics of the virus
itself may contribute.
All monkeys have a version of EBV so
it may have helped our immune systems to develop from an evolutionary
perspective. One of the big questions
is: if you completely eradicated EBV
from your body, would it mean you are
more susceptible to other infections?
There is evidence, for instance, that
EBV is important as we get older in
that it helps tweak our immune system.
One interesting aspect that hasn’t
been studied enough is understanding
why a small percentage of people
don’t ever contract EBV. Is there anything different about them in terms of
their susceptibility to disease or other
diseases that could be harnessed?
Studies have demonstrated that
when individuals are infected with
SARS-CoV-2, EBV reactivates, and
replication increases. A proportion of
individuals with long COVID appear
to have more EBV floating around
in their bodies.5 This is interesting
as there has been a long history of
EBV and its potential role in chronic
fatigue syndrome. Studying how
EBV interacts with other viruses will
also be vital to better understanding
these conditions and to developing
improved therapies. ⚫
20
iStock Credit Line
kate harrison, phd
AnnaMaria Vasco
21
iStock
The world’s population is aging rapidly –
by 2050, 17% of people will be over 65,
an estimated increase of almost ~100%
from 2019.
While this will have significant effects
on multiple sectors of society, one of
the most concerning impacts is the huge
increase in demand for healthcare. As
people age, their susceptibility to infection increases – as does the likelihood of
poorer outcomes to infection.
The idea of “healthy aging” – the ability
to retain as much physical, mental and
social ability as possible into old age – is
therefore set to become a huge focus in
aging research.
“If you look at recent aging reports
published by the House of Lords, there
is a big gap between how long we are
living and our actual health span,” says
Dr. Niharika A Duggal, assistant professor in Immunity and Aging at the
University of Birmingham, and trustee
for the British Society of Research in
Aging (BSRA). “The UK government is
aiming to add an extra 5 years of good
health within the average lifespan by
2035, but one of the key challenges obstructing this goal is immune aging and
the increased risk of infections in those
aged 75 and older.”
However, extensive research efforts
are underway, investigating both pharmacological and non-pharmacological
interventions that could reverse – or at
least slow down – immune system aging.
Could we eventually turn back time on
our failing immune systems?
HALLMARKS OF
IMMUNOSENESCENCE
As the body ages, so too does the immune system. This immune aging results
in a remodeling of the immune system
and a reduced ability to mount a robust
immune response, known as immunosenescence.
Symptoms of immunosenescence include degradation of immune organs and
a loss of new lymphocytes, coupled with
a chronic proinflammatory state known
as “inflammaging”. Together, these lead
to the onset of age-related diseases, poor
vaccination outcomes and increased
susceptibility to infectious disease and
malignancies.
The effects of immunosenescence vary
across both the innate and adaptive
immune system, resulting in almost
every component of the immune system
displaying dysregulation of some form.
Dysregulation begins with stem cells
in the bone marrow, with reduced production of adaptive immune cells, but
increased production of innate immune
cells. Although this means that the numbers of most innate cells remain stable
during aging, their ability to function
normally can be significantly impacted.
For example, aged neutrophils exhibit a
reduced ability to migrate towards the
site of infection, coupled with impaired
pathogen killing.
One particularly affected immune cell
type is T cells. In addition to the reduction in overall numbers of new T cells
produced by the bone marrow, changes
in the thymus interfere with T-cell maturation, as this is the organ where T cells
complete their development and become
fully functional. “As you age, the thymus
involutes, meaning it shrinks,” says
Dr. Leen Slaets, assistant professor at
Hasselt University, whose research
focuses on protective interventions
against immune aging. “In addition, the
specialized thymic epithelium is replaced
with adipose (fat) tissue, so the final
steps of T-cell maturation will not occur
as efficiently as in younger people.” This
loss of new T cells means it’s much harder to fight off infections with new pathogens, which was nowhere more obvious
than during the COVID-19 pandemic,
when age was shown to be a significant
risk factor for mortality.
However, it isn’t just new immune cells
that are affected by immune aging. In
older adults, memory cells – i.e., cells
that have already encountered a pathogen and can mount a faster, stronger
response on a repeat encounter with the
same pathogen – become the dominant T
cell population, but these cells also show
signs of immunosenescence. “When T
cells become senescent, they start to lose
expression of co-stimulatory receptors,
that help them recognise pathogens,”
explains Slaets. “They also become more
inflammatory – for example, T helper
cells start to produce the kind of cytotoxic molecules that are normally only
produced by killer T cells.”
WHAT DRIVES IMMUNE AGING?
This shift towards a pro-inflammatory
profile is echoed across the immune
system. Senescent (aging) cells
22
occur in all areas of the body and
are characterized by DNA damage
and morphological, phenotypic and
functional changes. They can become
highly pro-inflammatory, contributing
to an overall increase in base-level
inflammation – a state known as inflammaging.
Inflammaging not only alters the normal functions of the immune system,
but can also increase the risk of chronic inflammatory and autoimmune
diseases.
One facet of Duggal’s research looks
at the role of immunosenescence in
the age-associated onset of chronic
inflammatory diseases, such as rheumatoid arthritis (RA), and the drivers
behind this increase in inflammation.
“As we age, we begin to see a state of
dysbiosis in the microbiome, which
contributes to an increase in the permeability of the intestinal barrier, and
transfer of microbial products into circulation,” she explains. “A 2017 study
recognized dysbiosis as a causal factor
in inflammaging. The hypothesis is
that microbial products might induce
this pro-inflammatory state due to
chronic antigen stimulation, and their
ability to skew T cells towards more
pro-inflammatory subsets.”
Immunosenescence can also drive
aging in other organs and cell types.
Studies in mice have shown that inducing targeted immunosenescence in
young, otherwise healthy animals by
deleting a DNA repair gene resulted
in accelerated aging in other organs,
including the liver and kidneys. These
results demonstrated that the immune system plays a role in systemic
aging, and suggest that improving
immune function could contribute
to improving health and wellbeing in
older adults.
SLOWING THE CLOCK: THE
EFFECTS OF LIFESTYLE
So, what can be done to mitigate immunosenescence, and boost the function
of aging immune cells? According to
research by both Duggal and Slaets,
the answer may be simpler than first
thought: diet and exercise.
Duggal’s research group recently published a study that revealed older adults
who adhered to a Mediterranean diet had
fewer features of immunosenescence,
such as accumulation of senescent T
cells. “We think that the mechanism for
this link lies in the microbiome,” she explains. “We’ve done a study in mice that
shows that preventing transfer of microbial products from the gut into the blood
stream also prevents build-up of adipose
tissue and aging cells in the thymus. This
means that we can possibly preserve
the functions of the thymus and proper
T-cell development.”
Her group is now looking at similar trends
in humans. “We can broadly classify our
older adults into those that show dysbiosis and high levels of gut leakage (i.e.,
transfer of microbial products across the
intestinal barrier), and those that show
low levels, and we’re seeing more evidence of immune aging in those with high
gut leakage,” she says.
The protective effects of exercise against
age-related diseases have long been
established, however, exercise has also
been shown to have direct ani-inflammatory and immunomodulatory impacts. “In
cross-sectional studies, older adults who
exercise regularly have lower numbers
of senescent T cells and more new T
cells that are still able to replicate well,
compared to sedentary individuals,”
says Slaets. Indeed, a study published by
Duggal in 2018 showed that older adults
who were avid cyclists exhibited higher
levels of naïve T cells, immunoprotective elements and regulatory immune
cells than their age-matched sedentary
counterparts.
However, the molecular mechanisms
are still unclear. “In general, regular
periods of moderate exercise, whether
aerobic exercise or resistance training, are
associated with reductions in inflammatory markers,” Slaets goes on to explain.
“We hypothesize that the metabolites
produced by the muscles help reduce
immunosenescence; for example, skeletal
muscle is a major source of the amino
acid glutamine, which has been shown to
improve T-cell proliferation.”
Another theory suggests that exercise
flushes immune cells – particularly T
cells – from lymphoid tissue into circulation, increasing their opportunities
to attack and eliminate pathogens and
malignant cells, while also increasing the
turnover of senescent cells. Dr Slaets’
lab is currently investigating the effects of
biological sex on T-cell senescence during
exercise intervention.
BOOSTING IMMUNE FUNCTION: PHARMACEUTICAL INTERVENTIONS
As simple as these interventions sound,
diet and exercise changes are not possible
for everyone, and in some contexts –
such as vaccination – the aging immune
system may still need a pharmaceutical
helping hand.
Dr. Jenna Bartley is an assistant professor at the Center of Aging, University
of Connecticut, where her research
focuses on boosting immune responses
to vaccination in older adults. “When a
younger person is vaccinated, we usually
see a classical, textbook adaptive immune
response,” she says. “But older adults
have a reduced adaptive response, which
means lower levels and a shorter duration
of vaccine protection.”
“Adipose tissue is a big source of
inflammaging and pro-inflammatory,
senescent cells, and it also contributes
to thymic involution,” says Duggal.
“So, reducing adipose tissue is linked to
maintaining a healthy immune system.”
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iStock
Bartley’s research aims to improve vaccine
responses in older adults, using specific
pre-vaccination interventions. “A huge
advantage for implementation would be
to not need to reformulate vaccines, but
rather give an intervention to an older
adult prior to vaccination that would
then induce a stronger, more youthful
immune response.”
Metformin is one such potential intervention. Metformin is the first line
medication for type 2 diabetes. However, the drug also targets many of the
hallmarks of aging, including reducing
metabolic dysregulation in immune cells,
inflammation and immunosenescence.
“We showed that pre-treating older
adults with metformin before influenza
vaccination improves T helper cell
responses,” she explains. Although
this was only a pilot study, metformin
has also been shown to significantly
reduce the risk of hospitalization and
mortality in COVID-19 and influenza
infections in older and otherwise
vulnerable populations.
Another potential intervention is a class
of drugs called senolytics, which target
and kill senescent cells. Senescent cells
express the senescence-associated secretory phenotype (SASP), characterized
by the release of high levels of cytokines,
chemokines and proteases. While this is
beneficial in some roles, such as wound
healing, if they are not cleared (i.e., due to
immune aging), SASP components can
contribute to immunosenescence and
poor immune responses.
“The SASP contributes to the environment in the body being very pro-inflammatory and not conducive to a good
immune response,” says Bartley. “I’m
currently investigating whether eliminating these senescent cells prior to vaccination can improve vaccine response
by reducing that pro-inflammatory,
aged environment.”
Rather than directly targeting immune
cells, Bartley’s research targets aging
physiology as a whole. “The pillars
that drive aging are things like cellular
senescence, epigenetic alterations,
deregulated nutrient sensing and altered
intracellular communication,” she says.
“My kind of research, called geroscience,
looks at targeting those pillars with different interventions to try to delay aging
physiology to improve immune function
and overall health span.”
WHAT DOES THE FUTURE OF
AGING HOLD?
Maintaining quality of life and independence are key concerns for healthy aging.
Although there are contributing factors,
such as genetics, limiting immunosenescence may be able to postpone the
onset of age-related disease and improve
recovery and outcomes from infectious
diseases, increasing the health span of
older adults.
“I think we have a lot of promising interventions coming up,” says Bartley. “But,
I think that the best responses are going
to be combinations of different things –
optimizing exercise and nutrition, then
considering pharmaceutical intervention
– and it’s going to take a lot of research
to figure out that personalized medicine
approach.”
While pharmacological, specifically
personalized support for immunosenescence may not be ready for clinical use
just yet, all three researchers stressed
that there is an easy, already available
method to help delay immune aging:
regular exercise!⚫
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P
radipta Ghosh M.D. is professor of medicine and cellular
and molecular medicine at the
University of California (UC)
San Diego.
She is also the founding director of
the Institute for Network Medicine,
which is home to four centers of
transdisciplinary science.
To say Ghosh has a “full” career would
be an understatement. But if that’s
not enough, she’s first and foremost
a physician–scientist and an elected
member of the American Society for
Clinical Investigation and the Association for American Physicians, two
milestone achievements for anybody
on this career path. This makes her
one of a special breed of individuals
driven to make a difference not only
directly to patients, but in the pursuit
of research that goes deep into understanding, treating and preventing the
conditions that ail them.
Ghosh's vision is to enhance, enrich
and improve human existence by using the fundamentals of the “intranet
of cells” paradigm to drive disruptive
research in biology, medicine and
engineering. In an exclusive interview
with Technology Networks, she offers
her guidance on becoming a physician–scientist for those who are or are
considering following in her footsteps.
Karen Steward: What advice
would you give to anyone considering a career as a physician–scientist?
Pradipta Ghosh: My first piece of
advice would be: don’t go into it; that is
unless you absolutely want to do it for
the right reasons. Let me explain.
It takes courage, sacrifice and a
certain degree of altruism to get into
either of these careers (i.e., physician
or scientist). But to want to do both,
one needs to be foolish and hungry. I
highly recommend that everybody
considering this career — at various
stages of their career — monitor their
commitment by taking the “mirror
challenge” that Steve Jobs cited,
among the many pearls he shared in
his 2005 commencement address at
Stanford University. Jobs narrated that,
at the age of 17, he came across a quote
that went something like: “If you live
each day as if it was your last, someday
you’ll most certainly be right.” That
quote had a long-lasting impression
on him and since then he looked in
the mirror every morning and asked
himself: “If today were the last day of
my life, would I want to do what I am
about to do today?” He went on to say:
“And whenever the answer has been 'no'
for too many days in a row, I know I
need to change something.”
I did not read/hear this commencement
address until much later; but when
I read it, I realized that I had set up a
similar dial of commitment internally. I
kept asking myself, repeatedly at every
turn of my career, if I was enjoying this
for the right reasons, to justify leaving
my birthland, deserting my family and
putting them through immeasurable
grief, denying my son access to his
grandparents' love and robbing my
country of a doctor it produced. I
always put the price on one pan of the
weighing scale and my dreams/results
in another. I was relieved to hear a
voice say: “yes.” Nowadays I just use
the mirror test, and so far, the answers
have been: “hell yes!”
Chasing Dreams, Overcoming
Obstacles and Making a
Difference in the World of Medicine
and Science
KAREN STEWARD, PhD
25
Dr. Pradipta Ghosh
My second piece of advice would be:
marry right; pick a good corner (wo)
man. Your family needs to be ok with
not just accepting you for being foolish, they must be cheerleading you
on many days, and give you first-aid
on other instances when you are all
bruised/scorched up after a rejection
of some kind. But most importantly,
make sure that they want this as much
as you want it. There is a Japanese
proverb that says: fall seven, rise eight.
I have my own version of it: fall seven,
rise eight and recruit a “corner (wo)
man.” In the world of boxing, a corner
man is a person who is permitted to
be present in a fighter's corner during
a boxing match to provide advice or
assistance to the injured. I lucked out
that my spouse not only understood
"why" I chose this career path but told
me that he was proud of my choice.
I liken such support to a building's
foundation: unseen but essential.
My third piece of advice would be:
find mentors who have time for you.
The best mentors are those who are
able (pioneers and successful), available (access to their time, attention
and office) and who know how to
enable. Both my mentors – Kornfeld
and Farquhar – were able. One is the
father of glycobiology and another the
mother of modern cell biology as we
know it! Both were available because
they hardly traveled (almost never).
I had unbridled access to their time,
interest, hearts, minds, networks and
offices. Both had an open door/no appointment policy, which allowed me
to watch their styles, approach to anything (conflicts, etc.), disciplined and
principled behavior traits that were
the basis for the longevity of their
own careers and, most importantly,
learn what it takes to build a legacy/
field/paradigm.
Both were enablers: their roles
changed, sometimes multiple times
a day: therapist; guide; advisor;
cheerleader; confidant; parent; coach;
friend and colleague. And yet it remained constant – they were mirrors
– just reflected the cold, hard, naked
truth and, most importantly, what I
could grow up to be if I worked on my
deficiencies. I say this often to those
early in their career that I had no
easy way to produce an excuse for my
failure because of who mentored me. I
always say that my time with Kornfeld
made me fall in love with this career,
and my time with Farquhar ensured
that I gained the skills to sustain and
thrive in it. From Farquhar, who is remembered for her contributions over
seven decades as a pioneering microscopist, an inspiring researcher, mentor
and eminent leader of cell biology, I
learned countless invaluable lessons.
The time she invested in me equipped
me with everything she deemed essential for my growth. She introduced
me to her first postdoctoral fellow,
Dorothy (Dee) Ford Bainton, M.D (a
physician–scientist, a hematopathologist and the former vice chancellor
of academic affairs at the University
of California, San Francisco), subtly
planning the final chapter of her
legacy and leaving nothing to chance.
Shortly after her passing in 2019, Dee
and I co-authored the “In Memoriam”
article for the National Academy of
Sciences, in which we shared how forIf people are right in saying that
love and romance are illogical,
then being a physician–scientist
is less of science, and more of
romance and passion. You've got
to love it, all parts of it.
26
iStock
tunate we feel “to have been fellows in
her laboratory, experiencing her humanity, generosity, high ethical standards and unwavering commitment
to excellence”. Her influence has been
profound, and I am deeply grateful for
the foundation she provided, which
continues to inspire and guide me.
My fourth piece of advice: timing is
key when deciding to go together or
go solo. When faced with the choice
between working alone or collaborating, consider going solo initially (early
career), but opt for collaboration later
(mid–late career). Why? Because if
you're aiming to pioneer something
groundbreaking, whether it's a new
paradigm or an entirely novel field,
you'll need others to share your vision.
My final piece of advice: immunize
yourself against paralyzed academic
investigator's disease syndrome
(PAIDS). In a 1986 JCI piece, Joe
Goldstein reminds us of the dangers
of fixating on superficial concerns
rather than delving into the deep
mechanisms of disease. By focusing
on uncovering the fundamental
workings of guanine nucleotide
exchange modulators, I embarked on
a journey that led me from the micro
level of amino acids to the grand
scale of human biology. This level of
breadth and depth ensured that we
would never really run out of ideas
(i.e., we derisked) and that we could
drive progress and innovation in
whichever area of medicine our work
would take us.
In conclusion, I hope that I have not
discouraged anybody or intimidated
them. My journey highlights the endless possibilities that this career has
to offer. Every step, from my decision
to come to the States to my deliberate
choices in seeking mentorship and
making bold decisions on the kind of
science and collaborations to pursue,
has shaped my journey.
Finally, I would be remiss if I did not
add something important, and this
is about UC San Diego, which holds
a special place in my heart. Despite
tempting offers elsewhere, repeatedly,
I stayed because of its unique environment that encourages innovation
and fosters a culture of support. Still
a young institution, it has the start-up
mentality where hustling and getting
things done is encouraged. If you have
a vision, you are free to chase it. The
collaborative atmosphere and the culture of a relatively flat organizational
structure at UC San Diego create
what we, in medicine, refer to as the
Swiss cheese model. This model offers
a valuable perspective on managing
errors within complex organizations.
Imagine the organization as a stack of
cheese slices, each representing a layer
of support. Even if leadership changes
or administrative colleagues leave
their positions, or if not everyone in a
position of power supports your ideas,
it's rare for all the “holes” to align. This
ensures that good ideas are less likely
to fall through the cracks.
As I reflect on my journey, I am grateful
to have had the right preparation, the
right mentors and the right environment. As a proud product of the
UC San Diego Physician–Scientist
Training Pathway, I am excited for the
journey ahead, knowing that every
challenge is an opportunity to learn
and grow. Here's to chasing dreams,
overcoming obstacles and making a
difference in the world of medicine
and science. ⚫
If you're committed to winning over skeptics, it's
crucial to understand their perspective and provide
the evidence they need. If obtaining evidence
requires expertise beyond your own, strategic
collaborations are key. Remember, when you go
together, you can go much farther.
Two key things to remember are
that it’s a marathon, not sprint and
that you can do everything, but
just not all at once.
Read Ghosh’s full
interview over on the
Technology Networks
website.
27
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I
t is estimated by the World Health
Organization (WHO) that by the
end of 2022, 39 million people
were living with human immunodeficiency virus (HIV), and in that year
alone, 630,000 people had died from
HIV-related causes and 1.3 million
people had acquired the disease.
With the assistance of 11 UN cosponsors, UNAIDS is hoping to end the
HIV and AIDS epidemic by 2030.
This article will explore the difficulties faced in attempting to treat HIV,
an innovative prevention strategy
and the possibility of a cure.
Unveiling the Progress and
Challenges in the Fight Against HIV
KATE ROBINSON
HIV IS AN ONGOING PUBLIC HEALTH ISSUE, BUT PROGRESS MAY BE PUSHING US TOWARD A POTENTIAL CURE
AND MORE EFFECTIVE TREATMENTS.
Acquired immunodeficiency syndrome (AIDS)
AIDS is a disease that occurs when the immune system is damaged by
HIV. When treated, HIV is prevented from progressing, so many people
with HIV do not develop AIDS.
A person with HIV is considered to have AIDS either when the number
of CD4 (a type of white blood cell) cells drops below 200 cells per cubic
millimeter (a healthy person has anywhere from 500 to 1,600 cells per
cubic millimeter) or if they develop one or more opportunistic infections.
Without treatment, people with AIDS typically survive around three years.
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CHALLENGES IN HIV
MANAGEMENT
HIV is a retrovirus and can integrate
its genetic material into host genomes,
making it difficult to treat, and currently lacking a cure. If left untreated, HIV
can lead to acquired immunodeficiency
syndrome (AIDS).
“HIV can establish latent reservoirs
within our body. What this means is
that they can hide within cells in our
body and lay dormant for a long period
of time (e.g., months or years). Once
they become active, they can immediately replicate and infect other immune
cells,” said Dr. Emmanuel Ho, a professor at the University of Waterloo. “HIV
is able to alter its genetic makeup to
avoid our immune system or develop
resistance against anti-HIV drugs. HIV
can also infect and kill immune cells in
our body. As a result, these immune
cells will no longer be able to participate in the fight against HIV.”
Combined antiretroviral therapy
(cART) is currently the only treatment
for HIV. cART uses a mix of different
antiviral drugs to stop HIV replicating.
“cART targets the virus at several key
stages of its infection and replication
cycle. By doing so, cART reduces the
amount of virus in the body to undetectable levels, thereby protecting and
preserving these cells and the host's
immune system,” said Dr. Jamie Mann,
senior lecturer in vaccinology and
immunotherapy at the University of
Bristol. “When HIV infects T cells, on
rare occasions, rather than the virus
replicating and killing the host cell,
the virus becomes dormant. In this
dormant state, the virus is not susceptible to cART and can exist for a very
long time.”
Although cART is the main treatment
for those living with HIV, this therapy
cannot eradicate the latent reservoirs
developed by the virus, so the treatment must be ongoing to be effective.
While necessary, long-term use of
cART is associated with toxicity and
drug resistance.
There is also a global disparity in access
to treatments:
• Approximately 10 million people
living with HIV still do not have
access to antiretroviral therapy.
According to the 2023 UNAIDS
report, only 43% of children
living with HIV have access to
life-saving medicine.
• Over 25 million people living with
HIV at the end of 2022 were in
Africa. Gender inequalities continue to make an impact on the
HIV/AIDS response, particularly
in sub-Saharan Africa. In 2022,
women in the region accounted
for 63% of new infections. Worldwide, this figure was 46%.
• Adolescent girls and young
women in sub-Saharan Africa
are at a higher risk of infection
than other groups, in part due to
violence, stigma, discrimination
and harmful laws and practices.
Other factors impacting the odds
of infection include unstable
housing, lower levels of education, poverty and food insecurity.
• Across the globe, HIV prevalence
was 14 times higher among transgender people, 11 times higher
among men who have sex with
men, 7 times higher among people who inject drugs and 4 times
higher among sex workers in
2022 when compared with adults
in the general population.
“Stigma, discrimination, healthcare
access and treatment adherence
issues will all contribute to different
populations facing distinct challenges when attempting to cure HIV,”
said Mann.
PROTECTING AGAINST
SEXUAL TRANSMISSION
OF HIV
Dr. Emmanuel Ho leads a research
group focused on developing and
characterizing innovative drug delivery strategies, including nanomedicines, medical devices and biomaterials, for the treatment and prevention
of HIV/AIDS, among other diseases.
Ho recently developed a novel nanomedicine loaded with genetic material
called small interfering RNAs (siRNAs) to fight HIV.
siRNAs are non-coding double-stranded RNA molecules, typically used to silence a gene of interest.
These RNA interference tools are useful in the study of gene function and
can even be utilized for the treatment
of diseases such as cancer.
“siRNAs will play an important role in
the development of novel HIV therapeutics. If we can identify a ‘target’
(e.g., gene) in our body that promotes
or enhances HIV infection, as long as
Even though treatment can help to
effectively manage the condition,
some immune cells go into a
dormant state but still contain
viral DNA and can reemerge once
treatment ceases.
29
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we know the genetic sequence of the
target, we can easily design siRNAs to
bind and knockdown the expression
of that target,” said Ho.
The nanomedicine is intended to reduce the expression of CCR5 – a gene
that encodes a protein expressed by T
cells and macrophages, known to be
an important co-receptor for HIV to
enter cells – to prevent HIV from attaching to and entering host cells. “This
gene plays a role in the HIV infection
process. By reducing the expression of
CCR5, we hope to reduce HIV infection,” explained Ho.
By releasing a second siRNA to reduce the expression of Nef, a protein
produced by HIV to inhibit autophagy, the nanomedicine can reactivate
autophagy to eliminate the HIV still
present in the cells. As Ho explained,
“If, unfortunately, HIV is still able to
infect immune cells within the body,
we hope that our nanoparticles can
reactivate autophagy.”
When administered directly into the
vagina, naked siRNAs have difficulties
in achieving efficient mucosal uptake
due to their rapid degradation. To get
around these issues, Ho’s team encapsulated the siRNA in PEG-PLGA
polymer nanoparticles.
The nanomedicine was developed to
be delivered intravaginally to protect
against sexual transmission of HIV.
However, intravaginal delivery can
come with challenges. “In order to deliver nanoparticles to the submucosal
layer where immune cells are located, it
will first have to move across a layer of
cervicovaginal mucus, which can trap
the nanoparticles. Afterwards, it will
have to penetrate across an epithelial
layer. Finally, it is important to have the
nanoparticles enter the appropriate
cells,” explained Ho.
The team plans to optimize the nanoparticle system to attempt to achieve 100%
protection against infection.
LOOKING AHEAD: IS A CURE
ON THE HORIZON?
While infection with HIV is treatable,
there is no cure available. Dr. Jamie
Mann is interested in addressing this
issue with the development of novel
therapeutic and prophylactic vaccines
against HIV.
“The global distribution of HIV subtypes varies, with certain subtypes
being more prevalent in specific
regions. This variation presents
unique challenges for an HIV cure,
as transmission, disease progression
and responses to treatments differ.
Ultimately, the cost and complexity
of the treatment must be such that it
is easily accessible for all who require
it,” said Mann.
Mann recently co-led an international
study to demonstrate the ability of
a new therapeutic to cure HIV. The
therapeutic, an HIV-virus-like particle
(HLP), can reactivate the virus when
dormant, rendering it susceptible to
cART and the immune system.
Using blood samples from 32 participants living with chronic HIV, who
were on stable cART for a median of
13 years, the team found that HLP
was able to specifically target just the
immune cells containing latent HIV
reservoir and purge these cells of their
HIV. “Our data shows that divergent
strains of HIV are also susceptible to
the same HLP treatment, suggesting
that the HLP could have global applications as a therapy,” said Mann.
HLP are engineered to resemble HIV
and lack a viral genome, making them
incapable of causing an infection or
replicating. These particles can be administered by intramuscular injection.
The study shows that the HLP reverses latency irrespective of the subtype
of the individual’s infection.
Mann and the team plan on transitioning this work from the lab to clinical
trials. “These trials will allow us to
rigorously evaluate the effectiveness
of our strategy in a controlled setting
and hopefully bring us another step
closer to making a cure a reality.”
Research is driving the development of new treatments and could
introduce a cure for HIV, but ending
this epidemic will be a global effort,
requiring improved access to preventatives, therapeutics and education for
at-risk groups. ⚫
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B
ack in March 2020, Resia
Pretorius was virtually alone
in her lab at Stellenbosch
University, South Africa.
“We were in a hard lockdown. I was
the only one in the lab, basically,” she
recounts.
A distinguished research professor
specializing in blood coagulation, Pretorius was using her expertise to help
understand how SARS-CoV-2 – the
newly named virus that had just shut
down the world – was affecting patients' blood. She began her research
by adding amyloid clotting biomarkers to blood samples collected from
acute COVID patients and inspected
the results under a microscope.
“I said, ‘OK, let’s see where I get.’ And
I was knocked out of the room,” she
tells Technology Networks. “I couldn't
believe what I saw; these amyloid
signals were everywhere. And I got
back to the control sample and did
the same, and I saw little bits, but
not much.”
Pretorius had become one of the
first in the world to discover that
COVID-19 could induce widespread
clotting in the blood of patients. At
the time, however, the finding was
contrary to the growing assumption
among clinicians that the viral disease
thinned the blood of patients and that
anticoagulants could pose additional
risk to life.
“Everyone was thinking, ‘Oh dear,
it’s a bleeding disease,’” Pretorius
recollects. “People were terrified that
if you treat acute COVID with anticoagulants you will have everyone going
into bleeding and dying. At that stage,
nobody understood the disease – that
it was an endothelial vascular disease.
Everyone was saying it’s a lung disease, and they were all wrong.”
Fortunately, for a few acute COVID
patients in Stellenbosch, one doctor, a
colleague of Pretorius’s, was convinced
enough by her findings to administer
blood thinners.
“He lost six or seven very ill patients; the
rest all recovered,” she says. “Now, you
must remember at that stage, he was
in a very, very precarious position. He
knew he was helping his patients, but
everyone around him said you are going
to kill them. But his patients recovered
really well.”
Not only did most of the patients go on
to recover from SARS-CoV-2, but they
were also seemingly spared from any
lingering or new symptoms post-infecHow Long COVID Research Could
Change the Way We Think About
Blood Microclots
LEO BEAR-MCGUINNESS
KNOWLEDGE OF THE CONDITION’S MICROCLOTS COULD MAKE A MACRO DIFFERENCE
32
iStock
tion – a phenomenon that would come
to be dubbed “long COVID”.
This particular fortune began to deeply
intrigue Pretorius as anecdotes and
research papers detailing a global
long COVID crisis mounted. Were
anticoagulants the answer to this new
chronic malady? To find out, she would
first have to sample blood from long
COVID patients.
CLOTTED TEAM
“I then got hold of some patients who had
been in hospital on respiratory,” says
Pretorius. “They had recovered, but they
weren't the same. So, I got the first South
African long COVID patients by searching around for people and saying, ‘Are
you okay? Are you recovered?’ And they
said they're not; they’ve got this brain
fog; they suddenly can’t count – typically
what you find in long COVID. So I got
the first few patients’ blood samples.”
And what did she find? The exact same
clotting pattern observed in the blood of
acute COVID patients.
“We did our first trypsin digestion step,
which is a bog-standard method for mass
spectrometry, and we looked at the sample and it was like a ray of light coming
through the lab,” she says. “We looked at
the controls, the diabetes [blood taken
from diabetes patients], the acute, the
long COVID. I could see nothing in
controls, in the diabetes, because all of
the plasma was perfectly digested, as
you would expect, but I could see all
the clots still in the acute COVID and
long COVID.”
This observation seemingly confirmed
a biomolecular link between the immediate symptoms experienced by acute
COVID patients and the lingering
symptoms of those with long COVID.
But a key question remained: what had
prevented the trypsin from performing
its usual thinning effect?
“We went back to the drawing board,”
she recounts, “and we said, ‘OK, so,
trypsin, which is an enzyme that
digests protein, that doesn't seemingly work for acute COVID or long
COVID.’ So we developed a second
trypsin digestive process. And when
we ran proteomics [experiments], we
found all the proteins that you would
expect – the fibrinogens, the alpha and
the beta, all of those – and we found
another molecule: alpha 2-antiplasmin, and that molecule prevents clot
breakdown.”
“So now we had an answer as to why
trypsin doesn’t break down the
clots,” she says.
Armed with this new understanding,
Pretorius and her team at Stellenbosch
felt ready to share their discovery to
the global research community. They
soon filed a patent for their clot test
and drafted a paper on their work. Just
before sending the manuscript off for
publication, however, a colleague of
Pretorius’ made one small suggestion.
“She said, ‘This is really nice. However,
dense amyloid deposits is too difficult
on the ear; change it.’ And I was sitting
there thinking, ‘What else can I call
it?’ And ‘microclots’ just came to me,”
says Pretorius. “And 10 minutes before I submitted the paper, I changed
the words to microclots, and that’s
where microclots started.”
It proved to be a canny move in
medical marketing. Soon the word
“microclots” began clogging up long
COVID online support groups. Pleas
and questions swirled across social
media. Did every long-hauler have
clots thickening their blood? Could
the clots explain every symptom or
just the crushing fatigue that characterized most long COVID cases? And,
33
crucially, could blood thinners help
rid sufferers of the minuscule globs?
As a blood coagulation researcher
rather than a clinician, Pretorius
wasn’t able to fully answer the last
question, which has been posed to her
many, many times since her microclot
paper was first published. She could
not conduct any clinical trials that
may prove the benefits of anticoagulants – although she does believe the
drugs, in some quantity, could help
some patients.
In lieu of such trials, though, some
desperate long COVID patients
have sought to thin their blood by
other means.
INFLAMED IN THE DEEP VEIN
Since Pretorius first published her
findings, many sufferers have trialed
nattokinase in the hopes of bursting their
microclots and reducing their debilitating symptoms.
Some researchers and clinicians have
cast doubt, however, on whether the protein, when taken as an oral supplement,
still exhibits any clot-busting effects
once digested in the gut. Other researchers, though – including Pretorius – have
upheld its medical potential.
“Nattokinase, instead of blocking the
clots, breaks down the clots,” says Pretorious. “So it’s a safer option than triple
anticoagulation therapy, because triple
anticoagulation therapy blocks the platelets to hyper-activate and it prevents
new clots to form. But there’s a risk; you
could bleed. Nattokinase breaks the clot
down and you don’t have the worry that
you’re going to bleed. It acts on the clot
that’s already there.”
Given the relative safety of nattokinase
when compared to blood thinners
like warfarin or clopidogrel, Pretorius
doesn’t see the harm in long COVID
sufferers trying out a course of the health
supplement. If taken in safe but high
enough doses, it may just help give the
body’s damaged endothelial layer time
to heal itself, if only slightly.
“The clotting issues started in a perfectly
healthy individual with acute COVID,”
Pretorius explains. “Something triggered
then a continuation of clotting pathology
that never was taken care of. The bottom
line is, if the clotting pathology was
taken care of in the acute phase, nobody
[would have] went into long COVID.
But the clotting pathology just continued and made massive damage to the
endothelial layers.”
If all of your endothelial layers are damaged, oxygen transport can’t go to your
muscle,” Pretorius explains. “Your body
will have this persistent post-exertional
malaise. [As for] brain fog, your blood–
brain barrier is vasculature.”
“We think long COVID symptoms [are
due to] a damaged endothelial layer,” she
continues. “Do we say microclots cause
it? No. We say the spike protein [of the
SARS-CoV-2 virus] and inflammatory
molecules, antibodies, auto-antibodies –
all those things cause it, but [microclots]
are central in the disease pathway.”
“Now, what do you do?” she asks. “There’s
no real treatment for endothelial damage.
So we thought if we could get rid of the
clots and you get rid of the platelet hyperactivation, then you get to give your
endothelial layers a chance to heal. If that
happens, you’ve got a fighting chance
that the person with long COVID might
be better.”
MORE TESTING, MORE BLOOD
CLOTTING CONDITIONS
While countless long COVID sufferers
put Pretorius’s theory to the test, her
new focus is raising its awareness. Not
only could wider recognition benefit
long COVID patients across the globe,
but also thousands of patients with other
inflammatory illnesses.
“Rheumatoid arthritis, psoriasis, Parkinson’s, Alzheimer’s – in all of those
“The issue
is, what are
the dosages?”
she asks.
“Can triple
anticoagulation
work for 5%
of the people?
10%? 50%?
80%? We don’t
know that until
we do a proper
clinical trial.”
Nattokinase is an enzyme
isolated from natto, a
traditional Japanese dish
made from fermented
soybeans. It exhibits strong
fibrinolytic activity when in
contact with human blood
clots.
Endothelial cells
form a single cell
layer that lines all blood
vessels and regulates
exchanges between the
bloodstream and the
surrounding tissues.
34
iStock
diseases, you will have inflammatory
molecules in circulation,” says Pretorius. “They [the inflammatory molecules] will bind to the endothelial
layers via receptors, then we’ll have a
protein–protein interaction to change
the intimate amyloid shape.”
Sepsis, in particular, has already been
shown to have the exact kind of microclots that can be detected by the test,
as evidenced by the recent research
of Cheng-Hock Toh, a professor of
clinical infection at the University of
Liverpool.
“Professor Toh’s group did our method,” says Pretorius. “And they found
that by detecting microclots in the
sepsis patients, they could predict
who [would have] died and who
would not. The microclot load during
the sepsis event, if that was high, then
it predicted whether you recover or
not. And they suggested that this is
a first for an ICU condition to use as
a possible predictor of how sick the
individual is.”
“Hopefully, research like that will point
to uses of looking at it as a diagnostic
tool to prevent disease progression –
in the case of sepsis, perhaps even suggest how sick the patient is. I hope this
could be a diagnostic that they could
just add on – an add-on biomarker as
part of a broad spectrum that you are
looking at. Look at the D-dimer, look
at platelet markers, look at antibodies,
auto-antibodies, but just have this as
an add-on to further direct clinician
approaches to treatment.”
“Fifteen years from now, I hope that
this method will be in every single
pathology lab,” Pretorius enthuses,
“that anyone with long COVID or any
inflammatory disease that might think
that have gotten a clotted pathology,
can go to a laboratory and ask for the
test and get results from it.” ⚫
“Microclots are not only found in
acute COVID and long COVID,
they’re also found in all of the
others,” she says.
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iStock
F
or most scientists, publishing
their findings in peer-reviewed
journals is a necessity. There are
many motivators that drive them
to do this, from satisfying funding
conditions, meeting the goals of their
employers and opening up future funding opportunities, to advancing their
own careers. But ultimately, without
the sharing of findings with peers,
scientific advancement is held back.
However, the choice of where to
publish can be bewildering and the
process time-consuming and lengthy.
What should scientists consider —
impact factor, commercial vs society
publishers, review process, ease of
submission — the list goes on. And
what drives those publishers — profit, scientific integrity, community,
shareholders…?
In a bid to serve the scientific community as best they can, a coalition
— Purpose-Led PublishingTM — has
been formed between three publishers in the field of physical sciences:
the American Physical Society (APS),
IOP Publishing and AIP Publishing.
We spoke to Rachel Burley, chief publications officer at the APS, to find out
what Purpose-Led Publishing is and
how this initiative could benefit the
scientific community.
Karen Steward (KS): Could you
tell us what the concept of “Purpose-Led Publishing” is and how
it is different to other coalitions
that we see between publishers?
Rachel Burley (RB): Purpose-Led
Publishing is a coalition of three publishers in the field of physical sciences:
AIP Publishing, the American Physical
Society and IOP Publishing. Our organizations are non-profits with primary
missions to advance physics, disseminate knowledge and support the
physical sciences community. Together, we have defined a set of industry
standards that underpin high-quality,
Scientific Publishing Coalition Sees
Purpose Lead the Way
KAREN STEWARD, PhD
36
ethical scholarly communications and
that we commit to adhere to through
our coalition’s promise.
While there are other groups of academic publishers that meet regularly
to share knowledge, information or
best practices, our coalition is discipline-specific and community-oriented
through our scholarly societies. We
maintain close relationships with
our communities across a range of
activities in addition to our journals,
providing additional services like
annual meetings, special programs,
awards and professional development
resources.
KS: How did the coalition between AIP Publishing, the APS
and IOP Publishing come
about?
RB: Our organizations have been interconnected in different ways over many
years. We regularly meet at industry
events and through various publishing
groups. Recently, our discussions have
focused on how we can better convey
the value we provide to the physical
sciences and related communities. In
a world where academic publishing is
often seen as primarily profit-driven,
it can be challenging for our small
organizations to communicate that
our impact on our communities takes
precedence over profitability.
Together, our publishing portfolios
represent a significant share of the
high-quality journals in the physical
sciences and related fields. Through
the Purpose-Led Publishing coalition,
we can pool our resources and collaborate to amplify our message and reach
a broader audience. Our discussions
revealed a strong alignment in our
commitment to ethical publishing
practices, reinforcing our collective
promise to prioritize purpose over
profit. As our teams worked together
over the following months, there was
a growing sense of excitement about
the ways in which the coalition could
evolve, aiming to co-create new tools,
resources or initiatives enhanced by
collective effort.
Building on that momentum, three
months after the launch of the Purpose-Led Publishing coalition, we have
several projects well underway that
we will be excited to share over the
coming year.
KS: What were the motivators
for working together rather than
competing with each other?
RB: Scholarly publishers have been
competing for a long time, but we believe
this is self-limiting. We can offer more
through collaboration, which increases
our value to researchers. No two journals are identical in aims and scope, level
of selectivity or readership, making our
combined portfolio highly diverse and
complementary. Different journals foster
distinct academic communities, enhancing engagement and collaboration within
and across disciplines. Our motivation to
create the coalition centers around the
desire to serve our scientific community
better by working together more closely
to address common challenges. The
benefits of working together through
the promises we make to positively shift
our communities’ perceptions of us as
academic publishers will far offset any
risk presented by competition.
KS: What does this mean for scientists looking to publish their
work?
RB: With the academic landscape
becoming increasingly complex, researchers are finding they have more
and more options and decisions to
make when it comes to choosing where
to publish their work. Factors like a
journal's scope, audience, reputation
and peer review process play a significant role in decision-making, alongside
the increasing pressure to adhere to
open access mandates. More often
than not, however, the publisher of
the journal, and what they do with the
money made from publishing activities
do not form part of the decision-making process. With science as our only
shareholder, researchers publishing
with a Purpose-Led Publishing member are assured that their research will
not only advance knowledge through
high-quality, peer-reviewed journals
but also contribute to the physical
sciences community they are a part of.
KS: Did you come up against
any challenges during this process? How have these been
overcome?
RB: Our current focus is on getting a
program of activities up and running.
We’ve set up regular meetings and
working groups to develop initiatives
that will make the most difference. We
are exploring how artificial intelligence
(AI) can improve our services, expanding our collaborative funder engagement and looking at how we can break
down barriers for more researchers
to take part in the global research
endeavor. It’s still early days, but it’s
been inspiring to stand together to
drive innovation that will create lasting
positive change in our industry and
throughout the scientific community.
KS: What are your hopes for the
future regarding the coalition
and the wider concept of Purpose-Led Publishing?
RB: Our hope is that the coalition will
lead to more appreciation for the work
that society or not-for-profit publishers do. By developing initiatives that
support the physical sciences and adjacent communities, we’re demonstrating the value that our mission-driven
organizations provide. And with the
Purpose-Led Publishing promise,
we’re building additional trust with
researchers who publish in or read
our journals. Ultimately, it’s about
explaining that scientific publishing
should exist purely for scientific and
public good.
We are keeping the coalition to our
three organizations for the first year.
Once we’re established and have a few
of our shared initiatives launched, we
are open to considering expanding the
coalition to other like-minded, academic publishers. ⚫
Helena Slaets, Dr. Pradipta Ghosh
37
Meet the interviewees whose insights featured in issue 37 of The Scientific Observer:
Dr. Emmanuel Ho is a professor at the University of
Waterloo. His research group is interested in the development and
characterization of innovative drug delivery strategies including
nanomedicines, medical devices and biomaterials for the treatment
and prevention of HIV/AIDS, cancer and chronic wound healing.
Dr. Helena Slaets is
an assistant professor at BIOMED,
Hasselt University, Belgium,
specializing in immune aging and
cellular senescence. During her
PhD, she studied neuropoietic
cytokines in multiple sclerosis.
She did a postdoc at the HeinrichHeine University, Germany.
At Jessa clinical laboratory,
she validated diagnostic tests
for autoimmune diseases. She
managed an Interreg EMR project
on immune aging, leading to a European patent, and initiated
research on exercise interventions' impact on immunosenescence.
She also founded the Healthy Aging Research Consortium to unify
aging research and facilities at Health Campus Diepenbeek and
teaches Immunology at Hasselt University.
Dr. Erin Allmann Updyke MD is a co-host
of This Podcast Will Kill You. She is an epidemiologist and disease
ecologist currently in a medical residency program to complete
her training.
Dr. Erin Welsh is a co-host of This Podcast Will Kill You.
Welsh is a disease ecologist and epidemiologist, now working fulltime as a science communicator.
Dr. Lawrence Young is a virologist and emeritus
professor of Molecular Oncology at the University of Warwick’s
Medical School. He is internationally known for his work on the role
of virus infection in the development of cancer.
Dr. Pradipta Ghosh
obtained her medical degree from
Christian Medical College, Vellore,
in India before starting her career
in science under the mentorship
of Professor Stuart Kornfeld at
Washington University in St. Louis,
Missouri. She then moved onto an
internship and residency in internal
medicine and postdoctoral training in
the laboratory of Professor Marilyn
G. Farquhar, PhD at UC San Diego.
Her postdoctoral work directly led
to the characterization of a novel
stratum in signal transduction by a
unique class of molecules, which she
christened guanine nucleotide exchange
modulators (GEMs). Professor Ghosh
now investigates how GEMs facilitate
cellular communication, and how that
influences health and disease. To enable
the study of complex eukaryotic systems
and to determine the foundational rules
that support their communication,
she founded the Institute for Network
Medicine at the UC San Diego School
of Medicine. This institute and its four
vibrant centers unite mathematics,
computer science, systems biology
and tissue engineering to explore and
develop new interdisciplinary tools
for precision disease modeling. The
institute also provides opportunities for
cross-disciplinary training for graduate
students and postdoctoral trainees,
creating fertile ground for scientists to
inspire and be inspired.
Meet the Interviewees
Jamie Mann, Janine Gelineau (Medical Photographer/ Multimedia Specialist, UConn Health), Niharika Duggal
38 MEET THE INTERVIEWEES
Dr. Jamie Mann is a
senior lecturer in vaccinology and
immunotherapy at the University of
Bristol. His research centers around the
development of novel therapeutic and
prophylactic vaccines against mucosal
pathogens such as HIV and Influenza.
Dr. Jenna Bartley received her BS, MS and PhD
in Kinesiology from the University of Connecticut. Her graduate
research focused on interrelated aspects of human health,
metabolism and muscle function focusing on human subject
research. She completed a postdoctoral fellowship focused on
immunology and aging utilizing murine models of aging and
infection. She became an Assistant Professor in 2019 in the
Dept of Immunology and Center on Aging at UConn Health.
Her independent research focuses on combining her unique
education and training background in both murine and human
subject research to focus on translational aging research. Her
multidisciplinary research uses
geroscience approaches to bridge
the bench and the bedside to
uncover common pathways
among the aging process and to
develop potential interventions
to prevent age-related declines
in immune responses, physical
function, and overall healthspan.
Rachel Burley has been a leader in the research
communications and open science space for more than 20 years.
She is currently the chief publications officer for the American
Physical Society. Her background in business development and
publishing has pushed leading-edge trends in scientific, technical
and medical publishing.
Dr. Resia Pretorius is a distinguished research professor and head of the Physiological Sciences Department
at Stellenbosch University, South Africa. Her research primarily focuses on blood coagulation and circulating inflammatory
markers and how these play a role in inflammatory conditions like type 2 diabetes, rheumatoid arthritis and neuroinflammatory conditions like Parkinson's disease and Alzheimer's disease. She is also director of the medical technology
company BioCODE Technologies, which commercializes inflammation-centered medical technologies.
Dr. Niharika Duggal
is an assistant professor at the
Institute of Inflammation and Ageing
at the University of Birmingham with
a long-standing interest in the field of
immunesenescence and its impact on
ageing and health. Her research interests
centre around on investigating the
role of microbiome changes in driving
immunesenescence and is passionate
about the translation of her research
to pilot clinical trials investigating
the potential of microbiome-based
strategies in improving the health of the
expanding ageing population alongside
the identification of new avenues of
‘healthspan extending’ intervention
strategies with industrial collaborators.
She is a trustee for the British Society
of Research on Ageing the oldest ageing
society globally that is focusing on
promoting healthy ageing. Dr Duggal is
a co-lead for
the BBSRCMRC funded
"Food4Years"
Ageing
Network
working
towards
finding critical
issues within
the UK food
system that
affect older
adults.
ke System
Cicadas Could Help Us
Develop Future Self-Cleaning
Everyday Surfaces
CHEDELIC CHEDELIC
ISSUE 29, AUGUST 2023
WER OF PLACEBO IN WER OF PLACEBO IN
The Power and Potential of
Epigenetic Aging Clocks
Could Psychedelics Change
How We Treat Migraine and
Cluster Headache?
ISSUE 27, JUNE 2023
PRECISION
MICROBIOME EDITING
To Tackle Methane
Emissions
The Future of Food: Five Key
Considerations in Alternative
Protein Food Production
The Ultimate Guide
to Avoiding Predatory
Conferences
ISSUE 30, SEPTEMBER 2023
Exploring the Next Frontier in Food
Sponsored by
ISSUE 26, MAY 2023
ODEGENERATIONISSUE 28
Half-Synthetic Yeast
Engineered for the First Time
How Body-on-a-Chip Is
Transforming Research
ISSUE 32, NOVEMBER 2023
Biology
NATURE'S TOOLS, REDESIGNED
How Do You Make a Water
Purifier From Fruit Waste?
Building an Atlas
of the Brain
ISSUE 24, MARCH 2023
ISSUE 31, OCTOBER 2023
Little
Things
AN INSPIRED SCIENTIST'S PURSUIT FOR A CANCThe
How Collaboration and
Curiosity Make for a
Successful Scientist
Towards the Lab
of the Future
ISSUE 25, APRIL 2023
ISSUE 35, APRIL 2024
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