Optimizing Detection of Leachables To Ensure Drug Safety
App Note / Case Study
Published: October 22, 2024
Credit: iStock
The presence of extractables and leachables (E&Ls) in elastomeric materials, such as rubber gaskets, poses significant risks to drug product safety. These chemicals, including phthalates and nitrosamines, may migrate into drug products during storage or delivery, impacting both efficacy and stability. Addressing these risks requires precise detection methods that can identify these volatile compounds at trace levels.
This application note explores the use of gas chromatography and mass spectrometry techniques to identify and quantify volatile compounds in rubber gasket extracts.
Download this application note to discover:
- A detailed workflow for detecting volatile and semivolatile E&L compounds
- Comparisons of key techniques for enhanced sensitivity and accuracy
- Best practices for reducing background noise in complex E&L analyses
Application Note
Extractables and
Leachables
Authors
Sofia Nieto,
Anastasia Andrianova,
Bruce Quimby, and David Weil
Agilent Technologies, Inc.
Abstract
Chemicals that are part of polymeric container closure systems (CCS) and
drug delivery systems have the potential to migrate into drug products during
manufacturing, storage, transport, and delivery, and must be identified in the final
products to ensure their safety.
This application note presents a rubber gasket extractables study using a unit
mass resolution gas chromatography/mass selective detector (GC/MSD) and a
high-resolution gas chromatography/quadrupole time-of-flight (GC/Q-TOF) mass
spectrometer to establish a process for identifying GC-amenable extractables and
leachable (E&L) compounds.
Analysis of Volatile Compounds
Identified in Rubber Gasket
Extracts Using GC/MSD and
High-Resolution GC/Q-TOF
2
Introduction
Elastomeric gaskets, plungers, and O-rings are common
sources of leachable compounds in the manufacturing,
storage, and delivery of drug products. E&Ls derived from
elastomeric components may impact the stability and
efficacy of small and large molecule drug products1
, and
therefore need to be characterized thoroughly. Exposure to
some E&L chemicals, such as phthalates and nitrosamines,
even at low levels, may cause safety concerns.2
Chemicals
derived from the elastomer manufacturing process typically
include accelerators, activators, antioxidants, fillers,
plasticizers (including phthalates), mold release agents, and
other additives3
that may leach into the final product. Some
additives present in elastomer packaging materials may
also contain polycyclic aromatic hydrocarbons (PAHs)4
and
aliphatic hydrocarbons.
GC/MS is a commonly used technique for analyzing volatile
and semivolatile organic compounds in the E&L space. This
study demonstrates the capabilities of GC/MSD to identify
GC‑amenable compounds present in a solvent extract of a
rubber gasket by leveraging chromatographic deconvolution
in combination with retention index (RI)‑based filtering.
Adding a high-resolution accurate mass GC/Q‑TOF into
the E&L workflow provided a higher number of identified
chemicals. It also increased confidence in compound
identification and enabled structure elucidation of
unknown compounds.
The study was performed in the Network Workstation
configuration using Agilent OpenLab Electronic Content
Management (ECM) XT as the data repository. This
configuration enabled tools that facilitate compliance
with various national and EU electronic record regulations,
including audit trails, user authentication, role-based
permission controls, and remote data storage.5
Experimental
Sample preparation
Rubber syringe gaskets were extracted using tetrahydrofuran
(THF) solvent at room temperature for six months. An aliquot
of the extracts, along with solvent blanks, were analyzed using
GC/MSD and GC/Q-TOF systems.
Data acquisition
The GC/MS analysis was performed using an Agilent
5977C GC/MSD and an Agilent 7250 GC/Q-TOF system
in electron ionization (EI) mode. The GC/Q-TOF was also
used in low‑energy EI mode to help identify molecular ions
of unknowns.
Injection conditions were optimized for a broad range of E&L
compound boiling points. Using pulsed splitless injection
mode and delaying the purge flow to the split vent for 1
to 2 minutes maximized the response for both low- and
high‑boiling compounds (Figure 1).
Figure 1. EIC (m/z 57) of a C5 to C40 n-alkane standard analyzed under the starting (top) and optimized (bottom) conditions.
C40
C31
C22
C18
C13
C9
×105
Acquisition time (min)
Counts
0
1
2
3
4
5
6
7
×105 Counts
0
1
2
3
4
5
6
7
6 8 10 12 14 16 18 20 22 24 26 28 30 32 34 36
C40
×104
26 27 28 29 30 31 32 33 34 35 36
0
2
4
6
8
×104
0
2
4
6
8
3
Initially, both 30 m × 0.25 mm, 0.25 µm and 20 m × 0.18 mm,
0.18 µm Agilent J&W DB-5ms Ultra Inert columns were
evaluated for their chromatographic separation capabilities
of the complex E&L extracts, as well as sensitivity after
optimization of the carrier gas flow for each column
dimension. While the 20 m column provided sharper peaks
and greater sensitivity for trace-level compounds, the 30 m
column offered better separation, with a higher number
of components reliably identified. The 30 m column was
therefore selected.
All data were acquired in full spectrum acquisition mode
using the new Agilent J&W DB-5Q nonpolar low bleed column
and the DB-5ms Ultra Inert GC column. The acquisition
software operated under a unified compliance environment
using OpenLab ECM XT. The typical data acquisition
parameters are shown in Table 1.
Table 1. Data acquisition parameters.
Parameter Value
MS Agilent 7250 GC/Q-TOF; Agilent 5977C GC/MSD
GC Agilent 8890 GC
Column Agilent J&W DB-5Q, 30 m × 0.25 mm, 0.25 µm (p/n 122-5532Q)
Inlet Multimode inlet, 4 mm Ultra Inert inlet liner, single taper
with wool
Injection Volume 1 µL
Injection Mode Pulsed splitless (1 min purge, pulse at 40 psi for 1.1 min)
Inlet Temperature
Program 65 °C for 0.01 min, 300 °C/min to 280 °C
Oven Temperature
Program 45 °C for 2 min; 12 °C/min to 325 °C, 11 min hold
Carrier Gas Helium
Column Flow 1 mL/min constant flow
Transfer Line
Temperature
325 °C
Quadrupole
Temperature
150 °C
Source
Temperature 200 °C (Q-TOF)/300 °C (MSD)
Electron Energy 70 eV (standard EI MSD, Q-TOF); 15, 12, and 10 eV (low-energy
EI, Q-TOF)
Emission Current 5 µA (standard EI, Q-TOF); 0.3 µA (low-energy EI, Q-TOF),
35 µA MSD
Spectral
Acquisition Rate 5 Hz (Q-TOF), 2 Hz (MSD)
Mass Range m/z 50 to 1,000 (Q-TOF), 45 to 450 (MSD)
Data processing
The chromatographic deconvolution and library search were
performed in the Agilent MassHunter Unknowns Analysis
12.1 Update 2. The NIST23 library was used to perform the
initial compound identification. Structural elucidation was
performed using the Agilent Molecular Structure Correlator
(MSC) software 8.2.
Retention time (RT) locking was used to ensure consistent
RTs between the GC/MSD and GC/Q-TOF systems. It also
allowed for both RI and RT matching.
Results and discussion
Advantages of using the new Agilent low-bleed DB-5Q
column for E&L applications
A beta version of the new Agilent DB-5Q column was
evaluated in terms of suitability for E&L studies. Many
compounds of interest, including phthalates, antioxidants,
UV-absorbers, and stabilizers have high boiling points. The
detection of these compounds is therefore more susceptible
to interference from column bleed, which is more evident
at high oven temperatures. Two different sets of DB-5Q
and DB-5ms UI columns were compared and a significantly
lower column bleed at high oven temperatures was observed
for the DB-5Q columns, compared to the DB-5ms UI. One
representative example is shown in Figure 2A. The data
were acquired on the GC/Q-TOF using an emission current
of 0.3 µA, resulting in similar perfluorotributylamine (PFTBA)
abundances. The oven was kept at 325 ˚C while PFTBA and
background spectra were recorded.
A few high-boiling compounds, such as antioxidants and
UV-absorbers, were also analyzed on the two columns for
comparison. The DB-5Q column produced less column bleed
background in these conditions, as evident from the TIC of the
UV absorbers (Figure 2B), and a spectrum of the antioxidant
Irgafos 168, extracted without background subtraction
(Figure 2C).
It is typical for E&L extracts to contain a significant proportion
of water; therefore, the DB-5Q column performance was
tested before and after 130 injections of E&L extracts with
various solvents, including ethanol:water (1:1) and THF.
Octafluoronaphthalene (OFN) was injected at 1 pg onto the
column before and after 130 extract injections. Peak shape,
response, and spectrum integrity were all maintained after
injecting water-containing extracts (Figure 3).
4
Figure 2. Agilent DB-5ms and DB-5Q column bleed comparison on the GC/Q-TOF. (A) Background and PFTBA spectra collected at oven temperature 325 °C and
emission current 0.3 µA. (B) TIC of UV absorbers. (C) Raw spectra of an antioxidant Irgafos 168 without background subtraction (high boiling compound with an RI
of 3,398 and an RT of 27.6 minutes).
×105
×105
×107
×107
Counts Counts Counts Counts Counts Counts
0
2
4
6 207.0325
68.9947
130.9915 281.0515 218.9851
96.0043 147.0656 193.0499 263.9866 118.9923 239.2369 295.1032
0
2
4
6
68.9948
130.9916 218.9853 99.9932 118.9916 147.0657 168.9884 191.0012 239.2372 263.9868 281.0515
60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310
Column bleed ions
PFTBA ions
A
B
×106
×106
C
0
0.5
1.0
0
0.2
0.4
0.6
0.8
1.0
1.2
11 12 13 14 15 16 17 18 19 20 21 22 23 24
Tinuvin 328
Tinuvin 320
Irgacure 907
Padimate O
Methyl-2-benzoylbenzoate Irgacure 184
Benzophenone
0
0.5
1.0
1.5
2.0
2.5
3.0
3.5
4.0
*207.0323
281.0512 441.2920
308.2018 355.0699 415.1062 489.1250 549.1611 646.4509
0
0.5
1.0
1.5
2.0
2.5
3.0
3.5
4.0
207.0322
441.2918
281.0511 147.0654 327.0351 415.1061 489.1249 549.1613 646.4512
150 175 200 225 250 275 300 325 350 375 400 425 450 475 500 525 550 575 600 625 650
(*Saturated)
Mass-to-charge (m/z)
Mass-to-charge (m/z)
Acquisition time (min)
Column bleed ions
Irgafos 168 ions
Agilent DB-5ms UI
Agilent DB-5Q
Agilent DB-5ms UI
Agilent DB-5Q
Agilent DB-5ms UI
Agilent DB-5Q
5
Figure 3. (A) OFN EIC for m/z 271.9867 ± 20 ppm and (B) OFN spectrum. OFN was injected at 1 pg onto an Agilent DB-5Q column before and after 130 injections.
All injections were performed in splitless mode.
×104
×104
×104
×104
Counts Counts Counts Counts
A
B
Mass-to-charge (m/z)
Acquisition time (min)
0
0.5
1.0
1.5
5.724
0
0.5
1.0
1.5
5.709
4.1 4.2 4.3 4.4 4.5 4.6 4.7 4.8 4.9 5 5.1 5.2 5.3 5.4 5.5 5.6 5.7 5.8 5.9 6 6.1 6.2 6.3 6.4 6.5 6.6 6.7 6.8
0
0.5
1.0
1.5 271.9868
240.9883
221.9899 202.9914 135.9933 162.9974 92.9945 116.9947 253.9940
0
0.5
1.0
1.5
271.9867
240.9878
221.9896 202.9908 86.0721 105.0323 135.9935 152.9928 171.9932 260.0392
80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300
Before 130 injections
After 130 injections
Before 130 injections
After 130 injections
6
The consistency of RTs and RIs between the DB-5Q and
the standard DB-5ms UI column was also evaluated. The
RT values for n-alkanes in a range of C7 to C39, analyzed
using an RT-locked method, were found to be very close
when comparing the two columns (Figure 4A). The RIs for
70 compounds of various chemical classes and boiling
points had a remarkable consistency between the DB-5Q and
DB-5ms columns (with an average delta RI of 0.97 RI units)
and were comparable to NIST experimental RI values for the
semistandard nonpolar column phase (Figure 4B).
For additional information about the new ultralow bleed 5Q
columns, see a separate technical note.6
0
5
10
15
20
25
30
35
0 500 1,000 1,500 2,000 2,500 3,000 3,500 4,000
RT (min)
Alkane RI
DB-5ms
DB-5Q
900
1,400
1,900
2,400
2,900
3,400
RI
DB-5ms
DB-5Q
NIST
1,501
1,500
1,482
1,525
1,527
1,545
1,536
1,535
1,515
A
B
Figure 4. A comparison of RTs and RIs between the Agilent DB-5ms UI column and Agilent DB-5Q column. (A) n-Alkane RTs on the DB-5ms UI (blue) and DB-5Q
(orange) columns. (B) RI consistency for 70 compounds between the DB-5ms (dark blue) and DB-5Q (orange) columns. NIST23 experimental RIs are shown
in green.
7
Identification of semivolatile compounds in rubber
gasket extract using GC/MSD and GC/Q-TOF
Over 100 compounds were initially identified in the sample
using the GC/MSD by searching deconvoluted spectra
against the NIST23 library and filtering the results based on
RIs. Figure 5 shows an example of an identified compound,
eicosyl acetate, in the presence of coeluting components with
a high library match score (LMS) and excellent RI matching.
To take advantage of the accurate mass, high sensitivity
in full spectrum acquisition mode, and MS/MS capabilities
beneficial for identification of unknowns, the same rubber
gasket extracts were also analyzed using the GC/Q-TOF.
Over 80 compounds were identified in common between the
GC/MSD and GC/Q-TOF, a few of which are shown in Table 2.
Figure 5. TIC of a rubber gasket sample and deconvoluted spectrum for eicosyl acetate with an LMS of 91.8 and RI delta of 1.
LMS: 91.8
∆RI: 1
8
Table 2. Common compounds identified by both GC/MSD and GC/Q-TOF using a library match factor cutoff of 70.
RT Compound Name Formula CAS No.
4.48 Butanoic acid C4
H8
O2 107-92-6
5.11 Dipropyl acetal C8
H18O2 105-82-8
5.68 N-Ethylacetamide C4
H9
NO 625-50-3
5.75 Pentanoic acid C5
H10O2 109-52-4
7.13 Hexanoic acid C6
H12O2 142-62-1
7.15 Glycerin C3
H8
O3 56-81-5
7.22 Phenol C6
H6
O 108-95-2
8.04 2-Acetyl-5-methylfuran C7
H8
O2 1193-79-9
8.44 Heptanoic acid C7
H14O2 111-14-8
8.53 Isovaleraldehyde dipropyl acetal C11H24O2 1000431-60-3
8.54 Acetophenone C8
H8
O 98-86-2
8.55 p-Cresol C7
H8
O 106-44-5
8.60 4-Methylbenzaldehyde C8
H8
O 104-87-0
8.79 (1-Methoxypropyl)benzene C10H14O 59588-12-4
9.23 Triacetonamine C9
H17NO 826-36-8
9.63 Benzoic acid C7
H6
O2 65-85-0
9.72 Octanoic acid C8
H16O2 124-07-2
10.95 Nonanoic acid C9
H18O2 112-05-0
11.69 2,3-Dihydro-1H-pyrrolizin-1-one C7
H7
NO 17266-64-7
12.74 Diphenyl ether C12H10O 101-84-8
12.85 n-tert-Butylphenetole C12H18O 17269-94-2
12.93 Longifolene C15H24 475-20-7
13.18 Dimethyl phthalate C10H10O4 131-11-3
13.41 Ethyl 3-phenylpropenoate C11H12O2 103-36-6
13.42 1-Dodecanol C12H26O 112-53-8
13.76 2,4-Di-tert-butylphenol C14H22O 96-76-4
13.78 Butylated hydroxytoluene C15H24O 128-37-0
14.38 (3-Decyl)benzene C16H26 4621-36-7
14.54 Pentyl salicylate C12H16O3 2050-08-0
14.63 Diethyl phthalate C12H14O4 84-66-2
14.79 p-tert-Octylphenol C14H22O 140-66-9
15.12 Tributyl phosphate C12H27O4
P 126-73-8
15.39 (1-Ethylnonyl)benzene C17H28 4536-87-2
RT Compound Name Formula CAS No.
15.56 n-Hexyl salicylate C13H18O3 6259-76-3
15.62 3-Pentadecanone C15H30O 18787-66-1
15.74 4-(1,1-Dimethylheptyl)phenol C15H24O 30784-30-6
15.82 4-(7-Methyloctyl)phenol C15H24O 24518-48-7
15.93 1-Phenyl-1,3,3-trimethylindane C18H20 3910-35-8
16.20 Tetradecanoic acid C14H28O2 544-63-8
16.30 3,5-di-tert-Butyl-4-hydroxybenzaldehyde C15H22O2 1620-98-0
16.67 2,6,10,14-Tetramethylhexadecane
(Phytane) C20H42 638-36-8
16.74 3,5-di-tert-Butyl-4-hydroxyacetophenone C16H24O2 14035-33-7
16.81 Isopropyl myristate C17H34O2 110-27-0
16.98 2,4-Diphenyl-4-methyl-2(E)-pentene C18H20 22768-22-5
17.59 7,9-Di-tert-butyl-1-oxaspiro(4,5)deca-6,9-
diene-2,8-dione C17H24O3 82304-66-3
17.60 Farnesyl acetone C18H30O 1117-52-8
17.98 Dibutyl phthalate C16H22O4 84-74-2
17.99 n-Hexadecanoic acid C16H32O2 57-10-3
18.34 18-Norabieta-8,11,13-triene C19H28 1000197-14-1
18.71 N,N-Dimethyltetradecanamide C16H33NO 3015-65-4
19.38 Linoleic acid C18H32O2 60-33-3
19.60 Octadecanoic acid C18H36O2 57-11-4
19.80 n-Pentadecylcyclohexane C21H42 6006-95-7
20.31 N,N-Dimethylpalmitamide C18H37NO 3886-91-7
21.40 Eicosyl acetate C22H44O2 822-24-2
21.46 Antioxidant 2246 C23H32O2 119-47-1
21.56 N,N-Dimethyllinoleamide C20H37NO 2501-33-9
21.60 N,N-Dimethyloleamide C20H39NO 2664-42-8
21.74 Dehydroabietic acid C20H28O2 1740-19-8
22.09 Antioxidant 425 C25H36O2 88-24-4
23.02 Squalane C30H62 111-01-3
23.83 13-Docosenamide, (Z)- C22H43NO 112-84-5
26.81 Chondrillasterol C29H48O 481-17-4
27.37 (24Z)-Ethylidenecholesterol C29H48O 481-14-1
9
To gain higher confidence in E&L compound identification,
the accurate mass information was used to either confirm
or reject the compound ID with assistance of the ExactMass
tool of the MassHunter Unknowns Analysis software. The
ExactMass tool automatically assigns fragment ions with
formulas that are a subset of the molecular formula of the top
library hit, when possible. The library hit can be considered a
false positive when most specific fragments do not match
the compound formula within a small mass error. Figure 6
provides two such examples.
Due to the higher sensitivity in full spectrum acquisition mode
and higher data acquisition rate of the GC/Q-TOF, compared
to the GC/MSD, a few additional compounds have been
identified by GC/Q-TOF (Table 3). These compounds included
catalysts, solvents, vulcanization accelerators, plasticizers,
antioxidants, and UV stabilizers used in rubber manufacturing.
The compound identification was confirmed using accurate
mass and RI information.
A
B
Figure 6. Confirmation of compound ID using accurate mass. Fragment formulas are assigned based on accurate mass and the molecular formula of the library
hit. The mass error of each prominent fragment ion is then calculated and displayed in the ExactMass table. (A) A confirmed compound identified uniquely by
GC/Q-TOF. (B) A false positive, as determined when processing the GC/Q-TOF data based on accurate mass. However, the same compound ID was incorrectly
assigned to this spectrum based on the GC/MSD unit mass data with a high library match score of 89.
10
Table 3. Compounds identified uniquely by GC/Q-TOF.
RT Compound Name
Match
Factor Formula Delta RI CAS No.
4.17 Methyl isobutyl ketone 92.8 C6
H12O –29.7 108-10-1
4.61 Acetylacetone 87.7 C5
H8
O2 –19.7 123-54-6
4.63 Dimethylformamide 99.1 C3
H7
NO –21.2 68-12-2
4.86 Hexanal 96.7 C6
H12O –18.9 66-25-1
5.03 Furfural 80.0 C5
H4
O2 1.1 98-01-1
5.80 o-Xylene 96.5 C8
H10 3.3 95-47-6
5.93 2,6-Lutidine (2,6-dimethylpyridine) 82.0 C7
H9
N –14.1 108-48-5
6.02 2-Heptanone 94.6 C7
H14O –9.3 110-43-0
6.21 Heptanal 94.6 C7
H14O –11.7 111-71-7
6.66 3-Hepten-2-one 79.6 C7
H12O –6.2 1119-44-4
6.91 Piperidine, 2,2,6,6-tetramethyl- 91.0 C9
H19N –19.8 768-66-1
7.10 Benzaldehyde 90.9 C7
H6
O –10.8 100-52-7
7.36 α-Methylstyrene 95.6 C9
H10 –4.2 98-83-9
7.63 Octanal 89.1 C8
H16O –5.5 124-13-0
7.96 2-Ethylhexanol 92.6 C8
H18O –1.7 104-76-7
8.11 N-Methyl-α-pyrrolidone 84.7 C5
H9
NO 1.4 872-50-4
8.16 2-(2-Hydroxypropoxy)-1-propanol 82.7 C6
H14O3 0.1 106-62-7
9.01 Nonanal 96.3 C9
H18O –3.0 124-19-6
10.08 2,4-Dimethylthiophenol 89.1 C8
H10S 19.0 13616-82-5
10.29 Benzene, 1,3-dibromo- 91.2 C6
H4
Br2 14.1 108-36-1
10.70 Benzothiazole 92.2 C7
H5
NS –9.3 95-16-9
11.44 m-tert-Butylphenol 72.0 C10H14O –2.2 585-34-2
12.35 3-Hydroxy-2,2,4-trimethylpentyl
2-methylpropanoate** 73.2 C12H24O3 –3.7 77-68-9
12.57 p-tert-Pentylphenol 74.3 C11H16O 3.2 80-46-6
13.27 BHT-quinol 84.6 C15H24O2 14.2 10396-80-2
13.54 Dicyclopentyl(dimethoxy)silane 88.3 C12H24O2
Si –11.9 126990-35-0
13.58 3-Tridecanone 83.2 C13H26O 4.6 1534-26-5
13.98 Ethyl 4-ethoxybenzoate 82.8 C11H14O3 –5.7 23676-09-7
14.77 (2-Decyl)benzene 88.2 C16H26 10.0 4537-13-7
15.06 (1-Butylheptyl)benzene 83.8 C17H28 –4.1 4537-15-9
15.08 Fenuron 73.1 C9
H12N2
O –5.2 101-42-8
15.15 Benzophenone 93.4 C13H10O –10.0 119-61-9
15.55 2,4-Ditert-butyl-6-nitrophenol 78.7 C14H21NO3 1.7 20039-94-5
15.89 4-(1,1-Dimethylheptyl)phenol 83.2 C15H24O –25.9 30784-30-6
16.69 Anthracene 86.4 C14H10 –23.5 120-12-7
17.17 Diisobutyl phthalate 88.5 C16H22O4 5.0 84-69-5
17.70 Methyl hexadecanoate 74.6 C17H34O2 1.3 112-39-0
19.01 p-Tolyl disulfide 73.8 C14H14S2 3.4 103-19-5
21.05 Methyl dehydroabietate 79.9 C21H30O2 –17.2 1235-74-1
22.26 Bis(2-ethylhexyl) phthalate (DEHP) 69.6 C24H38O4 0.0 1000377-93-5
25.72 Tinuvin 770 87.1 C28H52N2
O4 130.4* 52829-07-9
* Only predicted RI is available
** Component of texanol
11
Identification of unknown compounds in the rubber
gasket extract
A few unknowns have been selected for further identification.
A typical structure elucidation workflow of unknown
compounds requires identification of the molecular ion as
the first step. This is challenging when using a standard EI,
as the abundance of molecular ions in EI is rarely preserved.
Low-energy EI (LE-EI) is a type of soft ionization that could
help increase the relative abundance of molecular ions and
thus their tentative identification. This technique is enabled
by the LE-EI capable source of the 7250 GC/Q-TOF and is
complementary to chemical ionization (CI). This technique
does not require a reagent gas or a source change and uses
the same tune file as a standard EI. Based on LE-EI results,
molecular ions of the unknown compounds were proposed
and listed in Table 4.
Table 4. Molecular ion formulas of unknowns tentatively
identified in the LE-EI experiments.
RT (min) Tentative m/z of Molecular Ion Formula
5.59 98.0362 C5
H6
O2
6.37 142.0988 C8
H14O2
7.82 155.1067 C9
H15O2
8.44 143.1067 C8
H15O2
10.72 154.0988 C9
H14O2
11.93 166.0988 C10H14O2
12.10 150.1039 C10H14O
13.31 182.0937 C10H14O3
13.89 206.1301 C13H18O2
15.19 250.1927 C16H26O2
An example of how LE-EI can be used for identification or
confirmation of molecular ions is shown in Figure 7, where a
gradual increase of tentative molecular ion relative abundance
at lower electron energies is observed.
Figure 7. An example of using LE-EI to identify or confirm molecular ions. The lower the electron energy, the higher the relative abundance of the
molecular ion. The tentative molecular ion is outlined in the rectangle.
175.1123
161.0964
190.1356
71.0494
250.1933 133.1013 281.0458 311.0904 341.0203
175.1118
190.1353
161.0961 250.1929
89.0594 281.0505 341.0197
190.1354
250.1931
175.1118
161.0961
71.0491 98.1087 135.0805 221.0839
250.1929
190.1352
175.1115
107.0853
60 80 100 120 140 160 180 200 220 240 260 280 300 320 340
70 eV
15 eV
12 eV
10 eV
Mass-to-charge (m/z)
12
Tentative molecular ions identified using LE-EI were selected
as precursors in MS/MS experiments (Figure 8) to further
perform structure elucidation. The target MS/MS was
performed by alternating the MS/MS and full spectrum
acquisition modes. The accurate m/z of the precursors
were entered in the Acquisition software to facilitate correct
recognition of the m/z of the molecular ion in the downstream
data processing. The collision energy (CE) was optimized for
each compound to yield optimal fragmentation, preserving an
abundance of high- and mid-range m/z ions in the spectrum,
when possible.
The structure elucidation was carried out in the MSC
software. The molecular formulas were automatically
assigned based on the accurate mass ions from the full
spectrum data that matched the m/z of the precursor at the
same RT. All possible structures for each tentative molecular
formula were extracted from the ChemSpider database and
evaluated based on fragmentation patterns. A proposed
structure for one of the unknowns is shown in Figure 9.
This structure could potentially correspond to a degradation
product of an antioxidant.
Figure 8. The MS/MS spectrum of one of the unknowns, using a tentative molecular ion as a precursor.
190.1354
175.1117
161.0958 250.1927
55.0550 77.0390 91.0541 105.0698 119.0846 135.0801 207.0649 222.9368
50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250
CE = 10 V
Counts
Mass-to-charge (m/z)
Figure 9. A proposed structure for one of the unknown compounds in rubber gasket extract using MSC.
www.agilent.com
DE-000968
This information is subject to change without notice.
© Agilent Technologies, Inc. 2024
Printed in the USA, September 10, 2024
5994-7777EN
Conclusion
The GC/MSD is an effective and accessible tool for
the analysis of volatile and semivolatile compounds in
complex E&L extracts. The established workflow includes
deconvolution and an RI-based library search with the data
acquisition performed in a compliant environment.
The high-resolution Agilent 7250 GC/Q-TOF enabled the
identification of additional components with increased
confidence, as well as structure elucidation of the
unknown compounds.
Furthermore, using the novel ultra-low bleed Agilent J&W
DB-5Q GC column resulted in a significant decrease
in background, which helps in the identification of
late‑eluting compounds.
References
1. Zhang, F.; Chang, A.; Karaisz, K.; Feng, R.; Cai, J.
Structural Identification of Extractables from Rubber
Closures Used for Pre-filled Semisolid Drug Applicator
by Chromatography, Mass spectrometry, and Organic
Synthesis. J. Pharm. Biomed. Anal. 2004, 34, 841–849.
DOI: 10.1016/j.jpba.2003.08.003
2. Baneshi, M.; Tonney-Gagne, J.; Halilu, F.; Pilavangan, K.;
Abraham, B. S.; Prosser, A.; Marimuthu, N. K.;
Kaliaperumal, R.; Britten, A. J.; Mkandawire, M. Unpacking
Phthalates from Obscurity in the Environment. Molecules
2023, 29(1), 106. DOI: 10.3390/molecules29010106
3. Taylor, R.; Son, P. N. Encyclopedia of Chemical
Technology. Interscience, New York. 1982, 20,
pp. 337–365.
4. Bohrer, D.; Viana, C.; Barichello, M. M.; de Moura, J. F.;
de Carvalho, L. M.; Nascimento, P. C. Presence of
Polycyclic Aromatic Hydrocarbons in Rubber Packaging
Materials and in Parenteral Formulations Stored in Bottles
With Rubber Stoppers. JPEN J Parenter Enteral Nutr. 2016,
41(6), 1037–1044. DOI: 10.1177/0148607116633801.
5. Support for Title 21 CFR Part 11 and Annex 11
Compliance: Agilent OpenLab Server and OpenLab ECM
XT. Agilent Technologies white paper, publication number
5994-7586EN, 2024.
6. How Does Bleed Impact GC/MS Data and How Can It
Be Controlled? Agilent Technologies technical overview,
publication number 5994-3228EN, 2024.
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