Proteomics research is evolving rapidly, with laboratories generating increasingly complex datasets from diverse experimental approaches. Managing and analyzing this data requires sophisticated software capable of handling everything from label-free quantitation to structural proteomics.
This infographic presents the latest proteomics software platforms providing comprehensive solutions that streamline your entire workflow from data acquisition to publication-ready results, with robust quantification capabilities and powerful visualization features.
Download this infographic to discover:
- Intelligent algorithms and statistical tools that reduce time from data to discovery
- Comprehensive workflow coverage across proteomics applications
- Scalable solutions that grow from single samples to high-throughput operations
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Unlock the full potential
of your proteomics research
Over 17 years of proteomics excellence
Thermo Scientific™ Proteome Discoverer™ software is a globally trusted platform with 17 years in
the field. Explore the capabilities it offers and how they can enhance your proteomics analysis.
One software for all
proteomics workflows
• Tandem mass tagging (TMT) and stable
isotope labeling by ammino acids in cell
culture (SILAC)
• Data dependent/independent analysis
(DDA/DIA) and hybrid DIA
• Single-cell and metaproteomics
• Top-down and crosslinking
• Post translational modifications (PTM)
• Immunopeptidomics
The ultimate toolbox for protein research
Harness the potential of proteomics
Intelligent search algorithms designed to work
with various acquisition methods such as DIA,
DDA, wide window acquisition (WWA), and
parallel reaction monitoring (PRM)
Easily visualize biological insights and
patterns in complex data through volcano
plots, PCA, heat maps, enrichment pathway
analysis and more
Tools for study management that make it
easy to assign study factors to quantification
measurements. Easily set up replicates,
define ratios and link conditions directly to
results tables and charts
Customizable node-based workflow system
to match your unique experimental needs
or use ready-to-go templates for common
proteomics studies
10,000+
high impact publications
using the software
7,500+
high-quality proteomics identifications
using PRIDE datasets and up to 850K
downloads per dataset
Discovery proteomics
• Comprehensive identification with
advanced algorithms
• Integration with search engines
Label-free
quantitation (DIA)
• Robust quantification without
chemical labeling
• Intelligent search algorithms,
deeper data mining
PTM analysis
• Precise localization and
quantification of PTMs
• Advanced phosphoproteomics
capabilities
TMT quantitation
• Multiplexed analysis with up to 35-
plex capability
• Real-time search for synchronous
precursor selection (SPS) MS3
Structural proteomics
• Top-down quantification of large
(>50kDa) proteoforms
• Crosslinked peptide identification for
structural biology insights
Complete
workflow coverage
From sample preparation to
publication-ready results
Streamlined analysis
Integrated statistical tools
reduce time from data to
discovery
Scalable solutions
From single samples to
high-throughput core facility
operations
Ready to transform your proteomics research?
Learn more at thermofisher.com/proteomediscoverer
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