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Bacterial and Fungal Isolate Sequencing: What You Need To Know

Bacterial and fungal isolate sequencing can provide a detailed view of microbial identity, relatedness, and genomic features beyond targeted markers. Yet generating complete, interpretable genomes depends on high-quality DNA, suitable extraction methods, and sufficient read length. Efficient workflows are also essential for timely characterization and routine use.

In this episode of Teach Me in 10, we’re joined by Anna Maria Niewiadomska, an Associate Director in Bioinformatics Field Applications at Oxford Nanopore Technologies, explores how isolate sequencing supports pathogen characterization, outbreak investigation, and antimicrobial resistance analysis.

Watch this episode to discover:

  • How whole-genome sequencing reveals microbial characteristics
  • Why DNA quality and read length matter for genome assembly
  • How sequencing workflows support rapid, repeatable analysis

Further resources:


Read More Real-World Case Studies in This Pathogen Whitepaper